| CRY2 | Q49AN0 | RNU6-256P-201 | ENST00000516747 | 97 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| CRY2 | Q49AN0 | RNU1-40P-201 | ENST00000516816 | 164 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| CRY2 | Q49AN0 | RNU1-97P-201 | ENST00000516872 | 164 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| CRY2 | Q49AN0 | RNA5SP490-201 | ENST00000517141 | 136 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| CRY2 | Q49AN0 | IGHVII-53-1-201 | ENST00000519538 | 255 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| CRY2 | Q49AN0 | AC016256.1-201 | ENST00000547971 | 354 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| CRY2 | Q49AN0 | AC022469.2-201 | ENST00000554759 | 396 nt | TSL 5 BASIC | 2.16 | □□□□□ -2.06 | | |
| CRY2 | Q49AN0 | DNAJC19P9-201 | ENST00000555084 | 351 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| CRY2 | Q49AN0 | MIR8076-201 | ENST00000611401 | 83 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| CRY2 | Q49AN0 | AL450472.1-202 | ENST00000637286 | 180 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| CRY2 | Q49AN0 | HFM1-201 | ENST00000370425 | 4931 nt | APPRIS P1 TSL 1 (best) BASIC | 2.16 | □□□□□ -2.06 | | |
| CRY2 | Q49AN0 | KTN1-207 | ENST00000438792 | 4449 nt | APPRIS ALT2 TSL 5 BASIC | 2.16 | □□□□□ -2.06 | | |
| CRY2 | Q49AN0 | SENP7-207 | ENST00000394095 | 4945 nt | APPRIS P3 TSL 1 (best) BASIC | 2.15 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | Y_RNA.414-201 | ENST00000384011 | 101 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | UBE2V1P8-201 | ENST00000437166 | 265 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AC133865.1-201 | ENST00000438619 | 339 nt | TSL 3 BASIC | 2.15 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AL353743.2-202 | ENST00000439544 | 473 nt | TSL 3 BASIC | 2.15 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AL353572.1-201 | ENST00000442490 | 417 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AC078980.1-201 | ENST00000485384 | 262 nt | TSL 2 BASIC | 2.15 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AC096711.1-201 | ENST00000510967 | 347 nt | TSL 5 BASIC | 2.15 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AC091944.1-201 | ENST00000521984 | 449 nt | TSL 3 BASIC | 2.15 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | LINC02398-201 | ENST00000536666 | 431 nt | TSL 3 BASIC | 2.15 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | CBX3P4-201 | ENST00000538909 | 354 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AC009754.1-201 | ENST00000566282 | 540 nt | TSL 4 BASIC | 2.15 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | MIR502-201 | ENST00000606349 | 86 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AC093913.1-201 | ENST00000614178 | 329 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AC009033.1-201 | ENST00000624279 | 431 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AC233981.2-201 | ENST00000611524 | 1614 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | SNORA16.1-201 | ENST00000364597 | 132 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | SNORA16B-201 | ENST00000364674 | 135 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | RNA5SP37-201 | ENST00000365420 | 130 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | RNU6-438P-201 | ENST00000365561 | 103 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | RNU6-968P-201 | ENST00000384076 | 107 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | RNU11-3P-201 | ENST00000391111 | 133 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | RNA5SP494-201 | ENST00000410653 | 129 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | FCF1P9-201 | ENST00000412546 | 282 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AC005482.1-201 | ENST00000420758 | 575 nt | TSL 4 BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | USP9YP28-201 | ENST00000435142 | 589 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | MTCO3P18-201 | ENST00000440206 | 761 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | PCMTD1P1-201 | ENST00000455560 | 355 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | RNU7-95P-201 | ENST00000459222 | 64 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AC005741.1-201 | ENST00000511094 | 432 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | RNU5F-4P-201 | ENST00000516581 | 114 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AC025871.1-202 | ENST00000518819 | 432 nt | TSL 3 BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | PRELID2P1-201 | ENST00000552837 | 301 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AC121758.2-201 | ENST00000553271 | 193 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AC090517.1-201 | ENST00000569307 | 266 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | MIR4287-201 | ENST00000579398 | 78 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | CPDP1-201 | ENST00000579660 | 283 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | MIR3976-201 | ENST00000606807 | 139 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | HTN1-205 | ENST00000610341 | 536 nt | APPRIS P1 TSL 1 (best) BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AL359314.1-201 | ENST00000616913 | 261 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | ST7-OT4_2.1-201 | ENST00000619089 | 172 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AC090617.10-201 | ENST00000624308 | 134 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | ETDC-201 | ENST00000635820 | 180 nt | APPRIS P1 BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AC245060.5-201 | ENST00000610778 | 3293 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | ANKRD36-208 | ENST00000639751 | 3090 nt | TSL 5 BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | RNU6-562P-201 | ENST00000362731 | 107 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | Y_RNA.99-201 | ENST00000363138 | 105 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | Y_RNA.157-201 | ENST00000363638 | 102 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | SNORA29-201 | ENST00000384183 | 140 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | IPO7P1-201 | ENST00000442031 | 636 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | HMGN2P18-201 | ENST00000450680 | 270 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | snoU13.6-201 | ENST00000458785 | 104 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | RNU7-187P-201 | ENST00000458985 | 68 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AL163540.1-201 | ENST00000485382 | 386 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | MTCYBP18-201 | ENST00000501056 | 747 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | IGLV3-17-201 | ENST00000519099 | 244 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AP005660.1-201 | ENST00000522972 | 293 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AP003171.1-201 | ENST00000532770 | 266 nt | TSL 2 BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AC011092.2-201 | ENST00000533659 | 586 nt | TSL 1 (best) BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AC036222.2-201 | ENST00000579033 | 333 nt | TSL 3 BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | FGF7P1-201 | ENST00000582820 | 288 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AC090227.2-201 | ENST00000591105 | 340 nt | TSL 5 BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AL022345.1-201 | ENST00000607292 | 135 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AL138726.1-201 | ENST00000614873 | 333 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | MIR7111-201 | ENST00000619751 | 72 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AC242426.3-202 | ENST00000607149 | 2397 nt | TSL 5 BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | SCN7A-206 | ENST00000619410 | 7186 nt | APPRIS P1 TSL 5 BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | SCN7A-207 | ENST00000621965 | 7186 nt | APPRIS P1 TSL 5 BASIC | 2.13 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | KIAA1107-201 | ENST00000370378 | 4622 nt | TSL 5 BASIC | 2.12 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | RNA5SP276-201 | ENST00000362580 | 94 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | Y_RNA.151-201 | ENST00000363566 | 112 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | SNORA32.2-201 | ENST00000384049 | 122 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | RNU6-1013P-201 | ENST00000384180 | 107 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | TRAJ49-201 | ENST00000390488 | 56 nt | APPRIS P1 BASIC | 2.12 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | RNU6-192P-201 | ENST00000391253 | 100 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | RNA5SP338-201 | ENST00000410495 | 85 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | RNU2-41P-201 | ENST00000410991 | 178 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | BX510359.4-201 | ENST00000423750 | 193 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | TRMT112P2-201 | ENST00000512910 | 132 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | LIAS-206 | ENST00000513731 | 826 nt | TSL 5 BASIC | 2.12 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | RNU6-273P-201 | ENST00000516937 | 96 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | LINC02095-202 | ENST00000543512 | 323 nt | TSL 3 BASIC | 2.12 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AP000907.4-201 | ENST00000604143 | 237 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AL133215.3-201 | ENST00000609801 | 448 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | LINC01206-214 | ENST00000610910 | 456 nt | TSL 5 BASIC | 2.12 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AC005520.5-201 | ENST00000613926 | 164 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | HOXA11-AS1_4.1-201 | ENST00000620901 | 233 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| CRY2 | Q49AN0 | AC130454.1-201 | ENST00000622948 | 401 nt | BASIC | 2.12 | □□□□□ -2.07 | | |