Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 RPL39P38-201ENST00000467018 153 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 AC079382.1-201ENST00000493346 557 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 AC016550.1-201ENST00000505348 785 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 AC016256.1-201ENST00000547971 354 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 ZNF321P-202ENST00000550843 495 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 MIR4509-3-201ENST00000578671 94 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 MIR4509-2-201ENST00000583920 94 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 AC104458.1-201ENST00000608243 463 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 MIR4509-1-201ENST00000618224 94 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 AC009878.1-201ENST00000621819 340 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 RNU6-1123P-201ENST00000362347 106 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 RNU6-910P-201ENST00000390844 107 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 RNU6-1106P-201ENST00000390845 107 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 MIR1283-1-201ENST00000408494 87 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 RPS26P45-201ENST00000471748 340 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 MTCO3P7-201ENST00000510008 774 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 PSMC1P5-201ENST00000512850 177 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 AC112206.4-201ENST00000515142 405 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 CENPUP1-201ENST00000526649 1202 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 MIR3664-201ENST00000579074 99 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 AL513534.2-201ENST00000603836 250 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 Z99289.3-201ENST00000605586 594 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 AC027807.2-201ENST00000616099 408 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 AL136221.1-201ENST00000621449 509 ntBASIC0.56□□□□□ -2.32
CCDC88AQ3V6T2 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
CCDC88AQ3V6T2 Y_RNA.60-201ENST00000362831 98 ntBASIC0.55□□□□□ -2.32
CCDC88AQ3V6T2 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.55□□□□□ -2.32
CCDC88AQ3V6T2 RNA5SP299-201ENST00000391203 116 ntBASIC0.55□□□□□ -2.32
CCDC88AQ3V6T2 MRPL42P2-201ENST00000403169 426 ntBASIC0.55□□□□□ -2.32
CCDC88AQ3V6T2 MRPL35P1-201ENST00000404272 572 ntBASIC0.55□□□□□ -2.32
CCDC88AQ3V6T2 AL356776.1-201ENST00000406574 447 ntBASIC0.55□□□□□ -2.32
CCDC88AQ3V6T2 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.55□□□□□ -2.32
CCDC88AQ3V6T2 AC073910.1-201ENST00000445047 438 ntBASIC0.55□□□□□ -2.32
CCDC88AQ3V6T2 AC105758.1-201ENST00000506038 399 ntBASIC0.55□□□□□ -2.32
CCDC88AQ3V6T2 NAF1-205ENST00000509434 385 ntTSL 3 BASIC0.55□□□□□ -2.32
CCDC88AQ3V6T2 RNA5SP255-201ENST00000516370 107 ntBASIC0.55□□□□□ -2.32
CCDC88AQ3V6T2 RNU6-1098P-201ENST00000516772 96 ntBASIC0.55□□□□□ -2.32
CCDC88AQ3V6T2 AC109479.2-201ENST00000517842 174 ntBASIC0.55□□□□□ -2.32
CCDC88AQ3V6T2 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.55□□□□□ -2.32
CCDC88AQ3V6T2 AL162424.1-201ENST00000602325 221 ntBASIC0.55□□□□□ -2.32
CCDC88AQ3V6T2 AL590229.1-201ENST00000603497 542 ntBASIC0.55□□□□□ -2.32
CCDC88AQ3V6T2 AC090578.1-201ENST00000604955 591 ntBASIC0.55□□□□□ -2.32
CCDC88AQ3V6T2 AC080013.3-201ENST00000606839 578 ntBASIC0.55□□□□□ -2.32
CCDC88AQ3V6T2 AP000240.1-201ENST00000609910 452 ntBASIC0.55□□□□□ -2.32
CCDC88AQ3V6T2 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.55□□□□□ -2.32
CCDC88AQ3V6T2 MIR338-201ENST00000636369 67 ntBASIC0.55□□□□□ -2.32
CCDC88AQ3V6T2 RNU6-428P-201ENST00000362942 107 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 RNU6-418P-201ENST00000384035 107 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 RNU6-35P-201ENST00000384530 107 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 RNU6-950P-201ENST00000384651 107 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 Y_RNA.576-201ENST00000384781 102 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 MIR653-201ENST00000385279 96 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 MIR1912-201ENST00000410389 80 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 AC092809.3-201ENST00000415453 231 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 AL354692.1-201ENST00000423044 315 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 PRPS1P1-201ENST00000445305 876 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 AC016632.1-201ENST00000503994 196 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 AC116347.2-201ENST00000514912 523 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 AC024995.1-201ENST00000523014 93 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 AL450472.1-202ENST00000637286 180 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 MTND5P17-201ENST00000418405 1603 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 RNU6-1029P-201ENST00000384109 107 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 RNU6-505P-201ENST00000384427 107 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 RNU6-692P-201ENST00000384496 107 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 RNA5SP467-201ENST00000391274 118 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 AL512286.1-201ENST00000439244 400 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 RNU6-685P-201ENST00000517088 95 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 AC136932.1-201ENST00000574771 208 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 MIR4999-201ENST00000585029 91 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 RNU4-5P-201ENST00000607255 135 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 AC008250.2-201ENST00000615261 205 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 AC120349.3-201ENST00000624377 529 ntBASIC0.54□□□□□ -2.32
CCDC88AQ3V6T2 AL117342.1-201ENST00000404861 406 ntBASIC0.53□□□□□ -2.32
CCDC88AQ3V6T2 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC0.53□□□□□ -2.32
CCDC88AQ3V6T2 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.53□□□□□ -2.32
CCDC88AQ3V6T2 AC048334.1-201ENST00000477975 159 ntBASIC0.53□□□□□ -2.32
CCDC88AQ3V6T2 AL133373.1-201ENST00000497098 94 ntBASIC0.53□□□□□ -2.32
CCDC88AQ3V6T2 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.53□□□□□ -2.32
CCDC88AQ3V6T2 AC010587.1-201ENST00000505809 469 ntBASIC0.53□□□□□ -2.32
CCDC88AQ3V6T2 RNU6-856P-201ENST00000516959 98 ntBASIC0.53□□□□□ -2.32
CCDC88AQ3V6T2 SNORA25.17-201ENST00000517184 124 ntBASIC0.53□□□□□ -2.32
CCDC88AQ3V6T2 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC0.53□□□□□ -2.32
CCDC88AQ3V6T2 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC0.53□□□□□ -2.32
CCDC88AQ3V6T2 AC019288.1-201ENST00000557918 224 ntBASIC0.53□□□□□ -2.32
CCDC88AQ3V6T2 AC064807.4-201ENST00000607201 407 ntBASIC0.53□□□□□ -2.32
CCDC88AQ3V6T2 AC021506.2-201ENST00000612354 169 ntBASIC0.53□□□□□ -2.32
CCDC88AQ3V6T2 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC0.53□□□□□ -2.33
CCDC88AQ3V6T2 Y_RNA.518-201ENST00000384552 113 ntBASIC0.52□□□□□ -2.33
CCDC88AQ3V6T2 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC0.52□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms