Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.41□□□□□ -2.02
COL28A1Q2UY09 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.41□□□□□ -2.02
COL28A1Q2UY09 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
COL28A1Q2UY09 RNA5SP393-201ENST00000363423 117 ntBASIC2.4□□□□□ -2.03
COL28A1Q2UY09 RNU6-595P-201ENST00000363944 107 ntBASIC2.4□□□□□ -2.03
COL28A1Q2UY09 RNU1-91P-201ENST00000364746 163 ntBASIC2.4□□□□□ -2.03
COL28A1Q2UY09 Y_RNA.356-201ENST00000365475 113 ntBASIC2.4□□□□□ -2.03
COL28A1Q2UY09 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC2.4□□□□□ -2.03
COL28A1Q2UY09 RNU6-1032P-201ENST00000384100 107 ntBASIC2.4□□□□□ -2.03
COL28A1Q2UY09 MIR518C-201ENST00000384822 101 ntBASIC2.4□□□□□ -2.03
COL28A1Q2UY09 MIR561-201ENST00000385216 97 ntBASIC2.4□□□□□ -2.03
COL28A1Q2UY09 SNORA46.1-201ENST00000391069 153 ntBASIC2.4□□□□□ -2.03
COL28A1Q2UY09 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
COL28A1Q2UY09 RNA5SP494-201ENST00000410653 129 ntBASIC2.4□□□□□ -2.03
COL28A1Q2UY09 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.4□□□□□ -2.03
COL28A1Q2UY09 RNU7-26P-201ENST00000458980 63 ntBASIC2.4□□□□□ -2.03
COL28A1Q2UY09 FO393415.2-201ENST00000480085 343 ntBASIC2.4□□□□□ -2.03
COL28A1Q2UY09 AF186996.7-201ENST00000492781 209 ntBASIC2.4□□□□□ -2.03
COL28A1Q2UY09 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.4□□□□□ -2.03
COL28A1Q2UY09 RNA5SP282-201ENST00000516355 108 ntBASIC2.4□□□□□ -2.03
COL28A1Q2UY09 APOOP3-201ENST00000536787 586 ntBASIC2.4□□□□□ -2.03
COL28A1Q2UY09 AL355375.2-201ENST00000574825 175 ntBASIC2.4□□□□□ -2.03
COL28A1Q2UY09 AL355297.2-201ENST00000604792 129 ntBASIC2.4□□□□□ -2.03
COL28A1Q2UY09 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.4□□□□□ -2.03
COL28A1Q2UY09 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.4□□□□□ -2.03
COL28A1Q2UY09 AL669831.3-213ENST00000636676 183 ntBASIC2.4□□□□□ -2.03
COL28A1Q2UY09 AC112487.2-201ENST00000637950 304 ntBASIC2.4□□□□□ -2.03
COL28A1Q2UY09 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.4□□□□□ -2.03
COL28A1Q2UY09 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.4□□□□□ -2.03
COL28A1Q2UY09 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
COL28A1Q2UY09 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.39□□□□□ -2.03
COL28A1Q2UY09 Y_RNA.404-201ENST00000383978 102 ntBASIC2.39□□□□□ -2.03
COL28A1Q2UY09 Y_RNA.533-201ENST00000384596 114 ntBASIC2.39□□□□□ -2.03
COL28A1Q2UY09 SNORA41-201ENST00000384675 132 ntBASIC2.39□□□□□ -2.03
COL28A1Q2UY09 MIR489-201ENST00000384923 84 ntBASIC2.39□□□□□ -2.03
COL28A1Q2UY09 AC011816.1-201ENST00000441346 546 ntBASIC2.39□□□□□ -2.03
COL28A1Q2UY09 OR2AQ1P-201ENST00000451972 200 ntBASIC2.39□□□□□ -2.03
COL28A1Q2UY09 AC087477.1-201ENST00000465747 340 ntBASIC2.39□□□□□ -2.03
COL28A1Q2UY09 RPL7P42-201ENST00000481005 679 ntBASIC2.39□□□□□ -2.03
COL28A1Q2UY09 RPL30P10-201ENST00000488148 337 ntBASIC2.39□□□□□ -2.03
COL28A1Q2UY09 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.39□□□□□ -2.03
COL28A1Q2UY09 CBX3P7-201ENST00000532876 502 ntBASIC2.39□□□□□ -2.03
COL28A1Q2UY09 EIF4A1P12-201ENST00000551910 141 ntBASIC2.39□□□□□ -2.03
COL28A1Q2UY09 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC2.39□□□□□ -2.03
COL28A1Q2UY09 FRG2DP-202ENST00000566967 323 ntBASIC2.39□□□□□ -2.03
COL28A1Q2UY09 MIR4446-201ENST00000578505 67 ntBASIC2.39□□□□□ -2.03
COL28A1Q2UY09 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC2.39□□□□□ -2.03
COL28A1Q2UY09 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.39□□□□□ -2.03
COL28A1Q2UY09 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.39□□□□□ -2.03
COL28A1Q2UY09 RPL17P51-201ENST00000605218 238 ntBASIC2.39□□□□□ -2.03
COL28A1Q2UY09 RNU6ATAC35P-201ENST00000609276 444 ntBASIC2.39□□□□□ -2.03
COL28A1Q2UY09 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC2.39□□□□□ -2.03
COL28A1Q2UY09 AL359697.1-201ENST00000624879 587 ntBASIC2.39□□□□□ -2.03
COL28A1Q2UY09 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.39□□□□□ -2.03
COL28A1Q2UY09 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
COL28A1Q2UY09 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.39□□□□□ -2.03
COL28A1Q2UY09 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.38□□□□□ -2.03
COL28A1Q2UY09 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.38□□□□□ -2.03
COL28A1Q2UY09 Y_RNA.2-201ENST00000362330 96 ntBASIC2.38□□□□□ -2.03
COL28A1Q2UY09 U3.9-201ENST00000363823 204 ntBASIC2.38□□□□□ -2.03
COL28A1Q2UY09 RNU6-944P-201ENST00000364023 107 ntBASIC2.38□□□□□ -2.03
COL28A1Q2UY09 RNA5SP210-201ENST00000391034 120 ntBASIC2.38□□□□□ -2.03
COL28A1Q2UY09 Y_RNA.597-201ENST00000410463 100 ntBASIC2.38□□□□□ -2.03
COL28A1Q2UY09 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC2.38□□□□□ -2.03
COL28A1Q2UY09 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC2.38□□□□□ -2.03
COL28A1Q2UY09 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC2.38□□□□□ -2.03
COL28A1Q2UY09 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.38□□□□□ -2.03
COL28A1Q2UY09 CBX3P8-201ENST00000532412 525 ntBASIC2.38□□□□□ -2.03
COL28A1Q2UY09 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.38□□□□□ -2.03
COL28A1Q2UY09 MIR5701-3-201ENST00000578890 82 ntBASIC2.38□□□□□ -2.03
COL28A1Q2UY09 MIR5701-1-201ENST00000585138 82 ntBASIC2.38□□□□□ -2.03
COL28A1Q2UY09 RMST_6.1-201ENST00000611980 203 ntBASIC2.38□□□□□ -2.03
COL28A1Q2UY09 MIR5701-2-201ENST00000615634 82 ntBASIC2.38□□□□□ -2.03
COL28A1Q2UY09 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.37□□□□□ -2.03
COL28A1Q2UY09 AL356292.1-201ENST00000283110 373 ntBASIC2.37□□□□□ -2.03
COL28A1Q2UY09 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
COL28A1Q2UY09 RNU4-73P-201ENST00000363164 141 ntBASIC2.37□□□□□ -2.03
COL28A1Q2UY09 RNU1-23P-201ENST00000363361 144 ntBASIC2.37□□□□□ -2.03
COL28A1Q2UY09 RNU6-137P-201ENST00000363680 108 ntBASIC2.37□□□□□ -2.03
COL28A1Q2UY09 SNORD115-8-201ENST00000363856 82 ntBASIC2.37□□□□□ -2.03
COL28A1Q2UY09 SNORD115-38-201ENST00000365037 82 ntBASIC2.37□□□□□ -2.03
COL28A1Q2UY09 RNU6-378P-201ENST00000384324 107 ntBASIC2.37□□□□□ -2.03
COL28A1Q2UY09 Y_RNA.473-201ENST00000384333 102 ntBASIC2.37□□□□□ -2.03
COL28A1Q2UY09 MIR208B-201ENST00000401172 77 ntBASIC2.37□□□□□ -2.03
COL28A1Q2UY09 AC022028.1-201ENST00000412054 408 ntBASIC2.37□□□□□ -2.03
COL28A1Q2UY09 ELOCP24-201ENST00000456370 334 ntBASIC2.37□□□□□ -2.03
COL28A1Q2UY09 RNU7-152P-201ENST00000458982 64 ntBASIC2.37□□□□□ -2.03
COL28A1Q2UY09 AC097473.1-201ENST00000508142 408 ntBASIC2.37□□□□□ -2.03
COL28A1Q2UY09 AC234781.5-201ENST00000508429 271 ntBASIC2.37□□□□□ -2.03
COL28A1Q2UY09 RNU4ATAC7P-201ENST00000516280 125 ntBASIC2.37□□□□□ -2.03
COL28A1Q2UY09 AL590705.4-201ENST00000532209 134 ntBASIC2.37□□□□□ -2.03
COL28A1Q2UY09 AC022616.8-201ENST00000533569 253 ntBASIC2.37□□□□□ -2.03
COL28A1Q2UY09 AC104581.2-201ENST00000572227 430 ntBASIC2.37□□□□□ -2.03
COL28A1Q2UY09 AC010928.2-201ENST00000588017 287 ntBASIC2.37□□□□□ -2.03
COL28A1Q2UY09 7SK.7-201ENST00000603504 247 ntBASIC2.37□□□□□ -2.03
COL28A1Q2UY09 AC005014.2-201ENST00000607795 599 ntBASIC2.37□□□□□ -2.03
COL28A1Q2UY09 AC133104.2-201ENST00000615272 193 ntBASIC2.37□□□□□ -2.03
COL28A1Q2UY09 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.36□□□□□ -2.03
COL28A1Q2UY09 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.36□□□□□ -2.03
COL28A1Q2UY09 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms