Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RNU7-4P-201ENST00000516961 62 ntBASIC2.23□□□□□ -2.05
HOXA1P49639 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.23□□□□□ -2.05
HOXA1P49639 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.23□□□□□ -2.05
HOXA1P49639 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC2.23□□□□□ -2.05
HOXA1P49639 MIR5695-201ENST00000579717 85 ntBASIC2.23□□□□□ -2.05
HOXA1P49639 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.23□□□□□ -2.05
HOXA1P49639 AC016727.2-201ENST00000603988 621 ntBASIC2.23□□□□□ -2.05
HOXA1P49639 U2.1-201ENST00000618978 145 ntBASIC2.23□□□□□ -2.05
HOXA1P49639 AL162373.1-201ENST00000620433 407 ntBASIC2.23□□□□□ -2.05
HOXA1P49639 ZNF658B-202ENST00000615961 3375 ntBASIC2.23□□□□□ -2.05
HOXA1P49639 AC005592.1-201ENST00000566527 1640 ntBASIC2.23□□□□□ -2.05
HOXA1P49639 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.23□□□□□ -2.05
HOXA1P49639 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
HOXA1P49639 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.23□□□□□ -2.05
HOXA1P49639 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.23□□□□□ -2.05
HOXA1P49639 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.22□□□□□ -2.05
HOXA1P49639 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.22□□□□□ -2.05
HOXA1P49639 RNA5SP361-201ENST00000362686 118 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 RNU6-486P-201ENST00000363116 107 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 RNU6-944P-201ENST00000364023 107 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 RNU6-461P-201ENST00000364195 107 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 Y_RNA.319-201ENST00000365138 92 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 RNU6-738P-201ENST00000384531 106 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 RNU6-1160P-201ENST00000384546 104 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 MIR153-2-201ENST00000385225 87 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 SNORA46.1-201ENST00000391069 153 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC2.22□□□□□ -2.05
HOXA1P49639 AL139132.1-201ENST00000431587 344 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.22□□□□□ -2.05
HOXA1P49639 MTATP8P1-201ENST00000467115 207 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.22□□□□□ -2.05
HOXA1P49639 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.22□□□□□ -2.05
HOXA1P49639 AC023141.11-201ENST00000508864 202 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 AC091826.1-201ENST00000514065 313 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.22□□□□□ -2.05
HOXA1P49639 MIR449C-201ENST00000516047 92 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 AC022868.1-201ENST00000517767 391 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 AC109329.1-201ENST00000518744 317 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 COX6CP5-201ENST00000527162 228 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
HOXA1P49639 CYP4A27P-201ENST00000567218 190 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.22□□□□□ -2.05
HOXA1P49639 AC006504.6-201ENST00000590142 199 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 AL713866.2-201ENST00000603579 219 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 AC007179.3-201ENST00000604976 235 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 AC096577.2-201ENST00000611455 153 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 RMST_6.1-201ENST00000611980 203 ntBASIC2.22□□□□□ -2.05
HOXA1P49639 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.22□□□□□ -2.05
HOXA1P49639 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
HOXA1P49639 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
HOXA1P49639 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
HOXA1P49639 ZNF204P-201ENST00000416749 2397 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 MIR422A-201ENST00000362286 90 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 Y_RNA.158-201ENST00000363651 101 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 SNORD115-32-201ENST00000364079 82 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 RNU6-1274P-201ENST00000384557 107 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 RNU6-541P-201ENST00000384709 110 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 RNA5SP201-201ENST00000410316 124 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 HMGB3P2-201ENST00000411913 584 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 AC114482.1-201ENST00000418010 247 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 USP9YP16-201ENST00000430287 407 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 ARL5AP4-201ENST00000430731 512 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.21□□□□□ -2.06
HOXA1P49639 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.21□□□□□ -2.06
HOXA1P49639 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.21□□□□□ -2.06
HOXA1P49639 USP9YP23-201ENST00000455085 407 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 AC112492.4-201ENST00000456549 352 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.21□□□□□ -2.06
HOXA1P49639 ANXA2P1-201ENST00000505539 926 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.21□□□□□ -2.06
HOXA1P49639 SCARNA3-201ENST00000517097 143 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 RNU6-58P-201ENST00000517143 103 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 HSPE1P18-201ENST00000517602 280 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 DEFB131C-201ENST00000528817 165 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 AC016256.1-201ENST00000547971 354 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.21□□□□□ -2.06
HOXA1P49639 MIR3923-201ENST00000579521 83 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 AC105245.1-201ENST00000581934 244 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 MIR3136-201ENST00000583498 78 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 AC008737.2-201ENST00000599446 118 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 PCGEM1.1-201ENST00000613431 131 ntBASIC2.21□□□□□ -2.06
HOXA1P49639 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
HOXA1P49639 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.21□□□□□ -2.06
HOXA1P49639 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.2□□□□□ -2.06
HOXA1P49639 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
HOXA1P49639 Y_RNA.389-201ENST00000383924 113 ntBASIC2.2□□□□□ -2.06
HOXA1P49639 SNORA51.11-201ENST00000384442 131 ntBASIC2.2□□□□□ -2.06
HOXA1P49639 MIR10B-201ENST00000385011 110 ntBASIC2.2□□□□□ -2.06
HOXA1P49639 MIR628-201ENST00000385229 95 ntBASIC2.2□□□□□ -2.06
HOXA1P49639 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
HOXA1P49639 RNU6-220P-201ENST00000390919 107 ntBASIC2.2□□□□□ -2.06
HOXA1P49639 MTCYBP2-201ENST00000407745 171 ntBASIC2.2□□□□□ -2.06
HOXA1P49639 AL590556.1-201ENST00000423231 483 ntBASIC2.2□□□□□ -2.06
HOXA1P49639 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
HOXA1P49639 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC2.2□□□□□ -2.06
HOXA1P49639 RPS12P2-201ENST00000439728 269 ntBASIC2.2□□□□□ -2.06
HOXA1P49639 RPS3AP12-201ENST00000443616 753 ntBASIC2.2□□□□□ -2.06
HOXA1P49639 RPS3P1-201ENST00000456781 192 ntBASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms