Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
TNFRSF4P43489 RNA5SP160-201ENST00000364866 120 ntBASIC1.9□□□□□ -2.11
TNFRSF4P43489 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
TNFRSF4P43489 SNORD116-11-201ENST00000383882 92 ntBASIC1.9□□□□□ -2.11
TNFRSF4P43489 Y_RNA.390-201ENST00000383932 102 ntBASIC1.9□□□□□ -2.11
TNFRSF4P43489 RNU6-767P-201ENST00000384132 107 ntBASIC1.9□□□□□ -2.11
TNFRSF4P43489 RNU6-95P-201ENST00000384697 107 ntBASIC1.9□□□□□ -2.11
TNFRSF4P43489 SNORA46.1-201ENST00000391069 153 ntBASIC1.9□□□□□ -2.11
TNFRSF4P43489 FGF7P8-201ENST00000402994 292 ntBASIC1.9□□□□□ -2.11
TNFRSF4P43489 RNA5SP450-201ENST00000411206 102 ntBASIC1.9□□□□□ -2.11
TNFRSF4P43489 AL030996.1-201ENST00000411430 235 ntBASIC1.9□□□□□ -2.11
TNFRSF4P43489 MTND3P8-201ENST00000412909 339 ntBASIC1.9□□□□□ -2.11
TNFRSF4P43489 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.9□□□□□ -2.11
TNFRSF4P43489 MTCO1P29-201ENST00000496868 288 ntBASIC1.9□□□□□ -2.11
TNFRSF4P43489 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.9□□□□□ -2.11
TNFRSF4P43489 RNU6-1088P-201ENST00000516850 104 ntBASIC1.9□□□□□ -2.11
TNFRSF4P43489 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.9□□□□□ -2.11
TNFRSF4P43489 SCOCP1-201ENST00000554676 349 ntBASIC1.9□□□□□ -2.11
TNFRSF4P43489 MIR4790-201ENST00000577799 79 ntBASIC1.9□□□□□ -2.11
TNFRSF4P43489 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.9□□□□□ -2.11
TNFRSF4P43489 MIR3923-201ENST00000579521 83 ntBASIC1.9□□□□□ -2.11
TNFRSF4P43489 MIR3683-201ENST00000580847 82 ntBASIC1.9□□□□□ -2.11
TNFRSF4P43489 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.9□□□□□ -2.11
TNFRSF4P43489 MIR1248-201ENST00000629190 106 ntBASIC1.9□□□□□ -2.11
TNFRSF4P43489 AC008555.8-201ENST00000623602 2168 ntBASIC1.9□□□□□ -2.11
TNFRSF4P43489 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.89□□□□□ -2.11
TNFRSF4P43489 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
TNFRSF4P43489 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.89□□□□□ -2.11
TNFRSF4P43489 AC005336.3-201ENST00000623833 2679 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 SNORD32B-201ENST00000364460 84 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 Y_RNA.504-201ENST00000384481 104 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 MIR521-1-201ENST00000384902 87 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 SNORA26.3-201ENST00000391119 136 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 SNORA12-201ENST00000391162 147 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 AL512604.1-201ENST00000404812 257 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 AP000275.1-201ENST00000411943 390 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 AL139396.1-201ENST00000421137 167 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.89□□□□□ -2.11
TNFRSF4P43489 PMCHL2-203ENST00000457791 237 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 RNU6-329P-201ENST00000459618 107 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 AC132942.1-201ENST00000486753 483 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 RPS27P21-201ENST00000486977 252 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 AC093259.1-201ENST00000509755 300 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 Y_RNA.682-201ENST00000516457 100 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 RNU6-567P-201ENST00000516746 107 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 RNU6-566P-201ENST00000516790 107 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 AP005639.2-201ENST00000527592 928 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.89□□□□□ -2.11
TNFRSF4P43489 AC005730.3-201ENST00000583067 366 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 AL359314.1-201ENST00000616913 261 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 SDR42E1P4-201ENST00000620894 481 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 AC009541.1-201ENST00000438279 2662 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.89□□□□□ -2.11
TNFRSF4P43489 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
TNFRSF4P43489 ZNF702P-202ENST00000434269 1966 ntBASIC1.89□□□□□ -2.11
TNFRSF4P43489 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
TNFRSF4P43489 RNU6-227P-201ENST00000362865 103 ntBASIC1.88□□□□□ -2.11
TNFRSF4P43489 Y_RNA.135-201ENST00000363439 95 ntBASIC1.88□□□□□ -2.11
TNFRSF4P43489 Y_RNA.151-201ENST00000363566 112 ntBASIC1.88□□□□□ -2.11
TNFRSF4P43489 Y_RNA.279-201ENST00000364763 95 ntBASIC1.88□□□□□ -2.11
TNFRSF4P43489 RNA5SP465-201ENST00000391195 109 ntBASIC1.88□□□□□ -2.11
TNFRSF4P43489 MTCYBP2-201ENST00000407745 171 ntBASIC1.88□□□□□ -2.11
TNFRSF4P43489 AL357139.1-201ENST00000407792 426 ntBASIC1.88□□□□□ -2.11
TNFRSF4P43489 RNU2-20P-201ENST00000410425 191 ntBASIC1.88□□□□□ -2.11
TNFRSF4P43489 MTCO3P46-201ENST00000425787 232 ntBASIC1.88□□□□□ -2.11
TNFRSF4P43489 Z82205.1-201ENST00000428456 297 ntBASIC1.88□□□□□ -2.11
TNFRSF4P43489 AC098614.3-201ENST00000438957 440 ntBASIC1.88□□□□□ -2.11
TNFRSF4P43489 AC003989.2-201ENST00000440224 169 ntBASIC1.88□□□□□ -2.11
TNFRSF4P43489 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.88□□□□□ -2.11
TNFRSF4P43489 MTND3P10-201ENST00000450967 341 ntBASIC1.88□□□□□ -2.11
TNFRSF4P43489 PCMTD1P1-201ENST00000455560 355 ntBASIC1.88□□□□□ -2.11
TNFRSF4P43489 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.88□□□□□ -2.11
TNFRSF4P43489 AC114801.2-201ENST00000503825 781 ntBASIC1.88□□□□□ -2.11
TNFRSF4P43489 Y_RNA.676-201ENST00000516393 96 ntBASIC1.88□□□□□ -2.11
TNFRSF4P43489 SNORA25.15-201ENST00000516487 89 ntBASIC1.88□□□□□ -2.11
TNFRSF4P43489 RNU7-30P-201ENST00000516835 62 ntBASIC1.88□□□□□ -2.11
TNFRSF4P43489 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.88□□□□□ -2.11
TNFRSF4P43489 AC021231.3-201ENST00000558497 370 ntBASIC1.88□□□□□ -2.11
TNFRSF4P43489 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.88□□□□□ -2.11
TNFRSF4P43489 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.88□□□□□ -2.11
TNFRSF4P43489 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.88□□□□□ -2.11
TNFRSF4P43489 MIR3976-201ENST00000606807 139 ntBASIC1.88□□□□□ -2.11
TNFRSF4P43489 DUXAP9-208ENST00000622815 614 ntBASIC1.88□□□□□ -2.11
TNFRSF4P43489 AL133216.2-202ENST00000634512 349 ntBASIC1.88□□□□□ -2.11
TNFRSF4P43489 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.88□□□□□ -2.11
TNFRSF4P43489 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
TNFRSF4P43489 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC1.87□□□□□ -2.11
TNFRSF4P43489 RNU6-845P-201ENST00000362578 103 ntBASIC1.87□□□□□ -2.11
TNFRSF4P43489 RNA5SP276-201ENST00000362580 94 ntBASIC1.87□□□□□ -2.11
TNFRSF4P43489 Y_RNA.99-201ENST00000363138 105 ntBASIC1.87□□□□□ -2.11
TNFRSF4P43489 Y_RNA.338-201ENST00000365320 114 ntBASIC1.87□□□□□ -2.11
TNFRSF4P43489 RNU6-26P-201ENST00000383985 107 ntBASIC1.87□□□□□ -2.11
TNFRSF4P43489 MIR517A-201ENST00000385001 87 ntBASIC1.87□□□□□ -2.11
TNFRSF4P43489 U3.40-201ENST00000408706 208 ntBASIC1.87□□□□□ -2.11
TNFRSF4P43489 AL356379.1-201ENST00000414105 126 ntBASIC1.87□□□□□ -2.11
TNFRSF4P43489 AC138393.2-201ENST00000414742 246 ntBASIC1.87□□□□□ -2.11
TNFRSF4P43489 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.87□□□□□ -2.11
TNFRSF4P43489 AC096920.1-201ENST00000423991 241 ntBASIC1.87□□□□□ -2.11
TNFRSF4P43489 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 178.2 ms