Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AC012306.1-201ENST00000423267 114 ntBASIC2.47□□□□□ -2.01
SHMT1P34896 MTND3P23-201ENST00000431980 347 ntBASIC2.47□□□□□ -2.01
SHMT1P34896 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.47□□□□□ -2.01
SHMT1P34896 CYP2C59P-201ENST00000457790 269 ntBASIC2.47□□□□□ -2.01
SHMT1P34896 SNORD19B-201ENST00000459623 84 ntBASIC2.47□□□□□ -2.01
SHMT1P34896 AC097473.1-201ENST00000508142 408 ntBASIC2.47□□□□□ -2.01
SHMT1P34896 AC093249.1-201ENST00000567049 203 ntBASIC2.47□□□□□ -2.01
SHMT1P34896 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.47□□□□□ -2.01
SHMT1P34896 7SK.7-201ENST00000603504 247 ntBASIC2.47□□□□□ -2.01
SHMT1P34896 AC126177.8-201ENST00000618339 1015 ntBASIC2.47□□□□□ -2.01
SHMT1P34896 AC008121.3-201ENST00000618726 433 ntBASIC2.47□□□□□ -2.01
SHMT1P34896 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.47□□□□□ -2.01
SHMT1P34896 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.47□□□□□ -2.01
SHMT1P34896 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
SHMT1P34896 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.46□□□□□ -2.02
SHMT1P34896 RNU5B-2P-201ENST00000363036 113 ntBASIC2.46□□□□□ -2.02
SHMT1P34896 RNA5SP240-201ENST00000365355 128 ntBASIC2.46□□□□□ -2.02
SHMT1P34896 Y_RNA.509-201ENST00000384506 99 ntBASIC2.46□□□□□ -2.02
SHMT1P34896 MIR29B2-201ENST00000385055 81 ntBASIC2.46□□□□□ -2.02
SHMT1P34896 RNA5SP494-201ENST00000410653 129 ntBASIC2.46□□□□□ -2.02
SHMT1P34896 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.46□□□□□ -2.02
SHMT1P34896 AL590556.1-201ENST00000423231 483 ntBASIC2.46□□□□□ -2.02
SHMT1P34896 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.46□□□□□ -2.02
SHMT1P34896 AL353752.1-201ENST00000454946 260 ntBASIC2.46□□□□□ -2.02
SHMT1P34896 RPL30P15-201ENST00000457129 321 ntBASIC2.46□□□□□ -2.02
SHMT1P34896 CKS1BP2-201ENST00000497342 240 ntBASIC2.46□□□□□ -2.02
SHMT1P34896 RNU6-1213P-201ENST00000517075 94 ntBASIC2.46□□□□□ -2.02
SHMT1P34896 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.46□□□□□ -2.02
SHMT1P34896 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.46□□□□□ -2.02
SHMT1P34896 CYP4A27P-201ENST00000567218 190 ntBASIC2.46□□□□□ -2.02
SHMT1P34896 MYL12BP1-201ENST00000569826 507 ntBASIC2.46□□□□□ -2.02
SHMT1P34896 MIR5002-201ENST00000584713 97 ntBASIC2.46□□□□□ -2.02
SHMT1P34896 AL078605.1-201ENST00000603529 500 ntBASIC2.46□□□□□ -2.02
SHMT1P34896 AL713866.2-201ENST00000603579 219 ntBASIC2.46□□□□□ -2.02
SHMT1P34896 Z98751.3-201ENST00000604447 521 ntBASIC2.46□□□□□ -2.02
SHMT1P34896 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.46□□□□□ -2.02
SHMT1P34896 AC137590.2-201ENST00000619709 240 ntBASIC2.46□□□□□ -2.02
SHMT1P34896 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
SHMT1P34896 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
SHMT1P34896 Z82209.1-201ENST00000422141 2135 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.45□□□□□ -2.02
SHMT1P34896 snoU2_19.1-201ENST00000362361 80 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 RNU6-1159P-201ENST00000362933 107 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 RNU6-595P-201ENST00000363944 107 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 RNU4-9P-201ENST00000364951 139 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 SNORA36A-201ENST00000384221 132 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 SNORD116-29-201ENST00000384516 83 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 Y_RNA.533-201ENST00000384596 114 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 RNU6-310P-201ENST00000384655 107 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 RNU6-331P-201ENST00000384724 107 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 RNU2-63P-201ENST00000410792 194 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 Y_RNA.646-201ENST00000410980 101 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 RNU6-1304P-201ENST00000411374 106 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.45□□□□□ -2.02
SHMT1P34896 AL591806.2-201ENST00000433122 173 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 RPL23AP50-201ENST00000434149 455 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 snoU13.23-201ENST00000458863 104 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 RPL23AP75-201ENST00000491601 451 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 AC021146.2-201ENST00000504736 556 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.45□□□□□ -2.02
SHMT1P34896 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC2.45□□□□□ -2.02
SHMT1P34896 RNA5SP384-201ENST00000516615 116 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 RNA5SP402-201ENST00000517148 110 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 RNU6-586P-201ENST00000517265 104 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 MIR4524B-201ENST00000581569 115 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 AC084781.2-201ENST00000615568 161 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 AC090517.3-201ENST00000625170 141 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 SCARNA4-201ENST00000629045 128 ntBASIC2.45□□□□□ -2.02
SHMT1P34896 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.45□□□□□ -2.02
SHMT1P34896 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.45□□□□□ -2.02
SHMT1P34896 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.45□□□□□ -2.02
SHMT1P34896 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
SHMT1P34896 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.45□□□□□ -2.02
SHMT1P34896 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
SHMT1P34896 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.44□□□□□ -2.02
SHMT1P34896 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
SHMT1P34896 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
SHMT1P34896 Y_RNA.431-201ENST00000384086 102 ntBASIC2.44□□□□□ -2.02
SHMT1P34896 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
SHMT1P34896 SNORA75.6-201ENST00000391318 127 ntBASIC2.44□□□□□ -2.02
SHMT1P34896 HMGB3P2-201ENST00000411913 584 ntBASIC2.44□□□□□ -2.02
SHMT1P34896 AC243428.1-201ENST00000421099 264 ntBASIC2.44□□□□□ -2.02
SHMT1P34896 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC2.44□□□□□ -2.02
SHMT1P34896 AL161788.1-201ENST00000441805 169 ntBASIC2.44□□□□□ -2.02
SHMT1P34896 ELOCP24-201ENST00000456370 334 ntBASIC2.44□□□□□ -2.02
SHMT1P34896 RN7SKP210-201ENST00000459176 261 ntBASIC2.44□□□□□ -2.02
SHMT1P34896 AC090515.1-201ENST00000465295 476 ntBASIC2.44□□□□□ -2.02
SHMT1P34896 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.44□□□□□ -2.02
SHMT1P34896 SCARNA16.2-201ENST00000516520 172 ntBASIC2.44□□□□□ -2.02
SHMT1P34896 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.44□□□□□ -2.02
SHMT1P34896 CBX3P8-201ENST00000532412 525 ntBASIC2.44□□□□□ -2.02
SHMT1P34896 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC2.44□□□□□ -2.02
SHMT1P34896 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.44□□□□□ -2.02
SHMT1P34896 Y_RNA.783-201ENST00000613546 102 ntBASIC2.44□□□□□ -2.02
SHMT1P34896 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.44□□□□□ -2.02
SHMT1P34896 MTND4P29-201ENST00000503122 1372 ntBASIC2.44□□□□□ -2.02
SHMT1P34896 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
SHMT1P34896 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.43□□□□□ -2.02
SHMT1P34896 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.43□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 171.4 ms