Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC012306.1-201ENST00000423267 114 ntBASIC3.07□□□□□ -1.92
SMARCA1P28370 AC108938.1-201ENST00000451204 136 ntBASIC3.07□□□□□ -1.92
SMARCA1P28370 AL109933.2-201ENST00000452651 260 ntBASIC3.07□□□□□ -1.92
SMARCA1P28370 RNU7-87P-201ENST00000459343 62 ntBASIC3.07□□□□□ -1.92
SMARCA1P28370 HMGB1P35-201ENST00000503360 598 ntBASIC3.07□□□□□ -1.92
SMARCA1P28370 RNA5SP112-201ENST00000515937 99 ntBASIC3.07□□□□□ -1.92
SMARCA1P28370 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.07□□□□□ -1.92
SMARCA1P28370 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.07□□□□□ -1.92
SMARCA1P28370 VN1R91P-201ENST00000594377 169 ntBASIC3.07□□□□□ -1.92
SMARCA1P28370 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.07□□□□□ -1.92
SMARCA1P28370 AC006023.1-201ENST00000603944 259 ntBASIC3.07□□□□□ -1.92
SMARCA1P28370 AC108206.1-201ENST00000570186 4159 ntBASIC3.07□□□□□ -1.92
SMARCA1P28370 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.07□□□□□ -1.92
SMARCA1P28370 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.06□□□□□ -1.92
SMARCA1P28370 RNU6-222P-201ENST00000362438 107 ntBASIC3.06□□□□□ -1.92
SMARCA1P28370 RNU6-486P-201ENST00000363116 107 ntBASIC3.06□□□□□ -1.92
SMARCA1P28370 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
SMARCA1P28370 Y_RNA.455-201ENST00000384230 98 ntBASIC3.06□□□□□ -1.92
SMARCA1P28370 RNU2-52P-201ENST00000410680 190 ntBASIC3.06□□□□□ -1.92
SMARCA1P28370 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.06□□□□□ -1.92
SMARCA1P28370 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.06□□□□□ -1.92
SMARCA1P28370 AC092427.1-202ENST00000430569 476 ntBASIC3.06□□□□□ -1.92
SMARCA1P28370 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.06□□□□□ -1.92
SMARCA1P28370 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC3.06□□□□□ -1.92
SMARCA1P28370 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC3.06□□□□□ -1.92
SMARCA1P28370 MTND5P22-201ENST00000458380 195 ntBASIC3.06□□□□□ -1.92
SMARCA1P28370 U8.20-201ENST00000459445 131 ntBASIC3.06□□□□□ -1.92
SMARCA1P28370 MTND5P16-201ENST00000460269 1703 ntBASIC3.06□□□□□ -1.92
SMARCA1P28370 AC080128.1-201ENST00000474389 1917 ntBASIC3.06□□□□□ -1.92
SMARCA1P28370 UBE2DNL-203ENST00000474922 222 ntBASIC3.06□□□□□ -1.92
SMARCA1P28370 AL121594.1-201ENST00000475906 575 ntBASIC3.06□□□□□ -1.92
SMARCA1P28370 SNORA40.14-201ENST00000516543 86 ntBASIC3.06□□□□□ -1.92
SMARCA1P28370 AC113195.1-201ENST00000579952 141 ntBASIC3.06□□□□□ -1.92
SMARCA1P28370 MIR3117-201ENST00000584034 78 ntBASIC3.06□□□□□ -1.92
SMARCA1P28370 AC073410.2-201ENST00000603240 332 ntBASIC3.06□□□□□ -1.92
SMARCA1P28370 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
SMARCA1P28370 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SMARCA1P28370 Z75746.1-201ENST00000440243 2080 ntBASIC3.05□□□□□ -1.92
SMARCA1P28370 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
SMARCA1P28370 Y_RNA.153-201ENST00000363615 91 ntBASIC3.05□□□□□ -1.92
SMARCA1P28370 SNORD14.1-201ENST00000365609 90 ntBASIC3.05□□□□□ -1.92
SMARCA1P28370 Y_RNA.389-201ENST00000383924 113 ntBASIC3.05□□□□□ -1.92
SMARCA1P28370 RNU1-57P-201ENST00000384491 166 ntBASIC3.05□□□□□ -1.92
SMARCA1P28370 MIR153-2-201ENST00000385225 87 ntBASIC3.05□□□□□ -1.92
SMARCA1P28370 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC3.05□□□□□ -1.92
SMARCA1P28370 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC3.05□□□□□ -1.92
SMARCA1P28370 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.05□□□□□ -1.92
SMARCA1P28370 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.05□□□□□ -1.92
SMARCA1P28370 ANXA2P1-201ENST00000505539 926 ntBASIC3.05□□□□□ -1.92
SMARCA1P28370 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.05□□□□□ -1.92
SMARCA1P28370 SCARNA3-201ENST00000517097 143 ntBASIC3.05□□□□□ -1.92
SMARCA1P28370 RN7SKP40-201ENST00000517211 242 ntBASIC3.05□□□□□ -1.92
SMARCA1P28370 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.05□□□□□ -1.92
SMARCA1P28370 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC3.05□□□□□ -1.92
SMARCA1P28370 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.05□□□□□ -1.92
SMARCA1P28370 AL078596.1-201ENST00000624856 447 ntBASIC3.05□□□□□ -1.92
SMARCA1P28370 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.05□□□□□ -1.92
SMARCA1P28370 Y_RNA.424-201ENST00000384063 103 ntBASIC3.04□□□□□ -1.92
SMARCA1P28370 RNU6-1105P-201ENST00000384774 107 ntBASIC3.04□□□□□ -1.92
SMARCA1P28370 RNA5SP213-201ENST00000391031 106 ntBASIC3.04□□□□□ -1.92
SMARCA1P28370 HMGB3P2-201ENST00000411913 584 ntBASIC3.04□□□□□ -1.92
SMARCA1P28370 AC114482.1-201ENST00000418010 247 ntBASIC3.04□□□□□ -1.92
SMARCA1P28370 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC3.04□□□□□ -1.92
SMARCA1P28370 AL358176.2-201ENST00000425769 204 ntBASIC3.04□□□□□ -1.92
SMARCA1P28370 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.04□□□□□ -1.92
SMARCA1P28370 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC3.04□□□□□ -1.92
SMARCA1P28370 AC040926.1-201ENST00000530195 238 ntBASIC3.04□□□□□ -1.92
SMARCA1P28370 AC027288.2-201ENST00000553028 243 ntBASIC3.04□□□□□ -1.92
SMARCA1P28370 AC090617.3-201ENST00000573670 475 ntBASIC3.04□□□□□ -1.92
SMARCA1P28370 MIR4672-201ENST00000583126 81 ntBASIC3.04□□□□□ -1.92
SMARCA1P28370 MIR3136-201ENST00000583498 78 ntBASIC3.04□□□□□ -1.92
SMARCA1P28370 MIR4635-201ENST00000583759 79 ntBASIC3.04□□□□□ -1.92
SMARCA1P28370 AL356280.1-201ENST00000603614 379 ntBASIC3.04□□□□□ -1.92
SMARCA1P28370 AC124312.5-201ENST00000604451 268 ntBASIC3.04□□□□□ -1.92
SMARCA1P28370 AL034555.1-201ENST00000604816 211 ntBASIC3.04□□□□□ -1.92
SMARCA1P28370 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
SMARCA1P28370 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.04□□□□□ -1.92
SMARCA1P28370 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
SMARCA1P28370 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
SMARCA1P28370 RNU6-655P-201ENST00000362858 107 ntBASIC3.03□□□□□ -1.92
SMARCA1P28370 VTRNA1-1-201ENST00000363120 99 ntBASIC3.03□□□□□ -1.92
SMARCA1P28370 AL590556.1-201ENST00000423231 483 ntBASIC3.03□□□□□ -1.92
SMARCA1P28370 EIF4EP4-201ENST00000424916 578 ntBASIC3.03□□□□□ -1.92
SMARCA1P28370 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.03□□□□□ -1.92
SMARCA1P28370 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC3.03□□□□□ -1.92
SMARCA1P28370 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.03□□□□□ -1.92
SMARCA1P28370 AL445687.1-201ENST00000439946 251 ntBASIC3.03□□□□□ -1.92
SMARCA1P28370 MTATP8P1-201ENST00000467115 207 ntBASIC3.03□□□□□ -1.92
SMARCA1P28370 AP000870.1-201ENST00000472927 406 ntBASIC3.03□□□□□ -1.92
SMARCA1P28370 RN7SL297P-201ENST00000483161 293 ntBASIC3.03□□□□□ -1.92
SMARCA1P28370 AC107032.1-201ENST00000485945 480 ntBASIC3.03□□□□□ -1.92
SMARCA1P28370 AC132942.1-201ENST00000486753 483 ntBASIC3.03□□□□□ -1.92
SMARCA1P28370 AC093852.1-201ENST00000503587 266 ntBASIC3.03□□□□□ -1.92
SMARCA1P28370 RNU2-53P-201ENST00000516257 147 ntBASIC3.03□□□□□ -1.92
SMARCA1P28370 RNU6-58P-201ENST00000517143 103 ntBASIC3.03□□□□□ -1.92
SMARCA1P28370 Y_RNA.721-201ENST00000517207 102 ntBASIC3.03□□□□□ -1.92
SMARCA1P28370 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.03□□□□□ -1.92
SMARCA1P28370 AC090616.3-201ENST00000582184 217 ntBASIC3.03□□□□□ -1.92
SMARCA1P28370 MIR3199-1-201ENST00000582434 88 ntBASIC3.03□□□□□ -1.92
SMARCA1P28370 AC016727.2-201ENST00000603988 621 ntBASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 136.7 ms