Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RNU6-1085P-201ENST00000363576 107 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 RNU6-82P-201ENST00000363970 107 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 Y_RNA.402-201ENST00000383972 102 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.06□□□□□ -2.24
COL5A3P25940 AL589823.1-201ENST00000429577 183 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 CBX3P6-201ENST00000430257 527 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 MTCO2P7-201ENST00000446518 666 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AL360271.2-201ENST00000447710 161 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AC003071.1-201ENST00000451219 789 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 TPTE2P5-203ENST00000458118 728 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AC005908.1-201ENST00000468701 347 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AC019235.1-201ENST00000503847 207 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
COL5A3P25940 SNORD27.1-201ENST00000516319 72 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 Y_RNA.687-201ENST00000516558 91 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 RNA5SP503-201ENST00000517047 117 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 ACA59.2-201ENST00000517061 156 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 MTND1P35-201ENST00000526739 508 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 HIF1AP1-201ENST00000553642 175 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC1.06□□□□□ -2.24
COL5A3P25940 AC008269.2-201ENST00000561915 1105 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AC026271.5-201ENST00000577873 130 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AC078795.2-201ENST00000602835 1252 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 RNU6-89P-201ENST00000606519 100 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AC093788.1-201ENST00000609356 927 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AC091925.1-201ENST00000623204 462 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AC139792.3-201ENST00000623525 224 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AP003400.5-201ENST00000624827 617 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.06□□□□□ -2.24
COL5A3P25940 RNU6-486P-201ENST00000363116 107 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 RNU6-72P-201ENST00000384285 79 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 MIR544A-201ENST00000384855 91 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 MTCO3P40-201ENST00000392516 676 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 MIR936-201ENST00000401264 98 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AL133475.1-201ENST00000404414 305 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 RNA5SP390-201ENST00000410191 113 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 RNU2-63P-201ENST00000410792 194 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AC138623.1-201ENST00000418060 216 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC1.06□□□□□ -2.24
COL5A3P25940 SDAD1P3-201ENST00000427380 333 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AL669831.1-202ENST00000428504 417 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AC000111.3-201ENST00000433478 193 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 GTF2IP13-201ENST00000438487 386 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.06□□□□□ -2.24
COL5A3P25940 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC1.06□□□□□ -2.24
COL5A3P25940 AC243964.1-201ENST00000441814 261 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 PRPS1P1-201ENST00000445305 876 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.06□□□□□ -2.24
COL5A3P25940 AL356010.1-201ENST00000456364 102 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 TPT1P7-201ENST00000458300 517 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AP001025.1-201ENST00000486139 332 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC1.06□□□□□ -2.24
COL5A3P25940 SNORA25.17-201ENST00000517184 124 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.06□□□□□ -2.24
COL5A3P25940 CYCSP27-201ENST00000527643 293 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC1.06□□□□□ -2.24
COL5A3P25940 MIR548AC-201ENST00000585049 88 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AC007014.2-201ENST00000615581 479 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AC015540.1-201ENST00000615828 501 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AC009233.1-201ENST00000616477 371 ntBASIC1.06□□□□□ -2.24
COL5A3P25940 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC1.06□□□□□ -2.24
COL5A3P25940 MIR126-201ENST00000362291 85 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 Y_RNA.38-201ENST00000362617 102 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 RNU6-428P-201ENST00000362942 107 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 RNU5E-7P-201ENST00000365290 117 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
COL5A3P25940 SNORA69-201ENST00000383895 132 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 RNU6-1215P-201ENST00000384441 102 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 SNORD116-4-201ENST00000384733 96 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 MIR181A1-201ENST00000385026 110 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 MIR10A-201ENST00000385043 110 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 RNU6ATAC27P-201ENST00000408289 119 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 RNU4-46P-201ENST00000410818 138 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 RNU6-1068P-201ENST00000410958 103 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 AL606489.2-201ENST00000433886 234 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC1.05□□□□□ -2.24
COL5A3P25940 AL161651.1-201ENST00000440882 223 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC1.05□□□□□ -2.24
COL5A3P25940 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
COL5A3P25940 AC079140.5-201ENST00000507882 310 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 MTCYBP40-201ENST00000509390 1135 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC1.05□□□□□ -2.24
COL5A3P25940 RNU6-377P-201ENST00000515965 102 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 SNORD60.2-201ENST00000516883 86 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 AP005639.2-201ENST00000527592 928 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 AL512360.1-201ENST00000555346 234 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.05□□□□□ -2.24
COL5A3P25940 BNIP3P30-201ENST00000601184 574 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 AL355598.1-201ENST00000604169 202 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 AF250324.2-201ENST00000608299 610 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC1.05□□□□□ -2.24
COL5A3P25940 U2.17-201ENST00000611454 95 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC1.05□□□□□ -2.24
COL5A3P25940 AL159153.1-201ENST00000619688 317 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 USP12-203ENST00000620323 349 ntTSL 3 BASIC1.05□□□□□ -2.24
COL5A3P25940 MIR6513-201ENST00000621188 64 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
COL5A3P25940 AC068137.3-201ENST00000639191 341 ntBASIC1.05□□□□□ -2.24
COL5A3P25940 AC099654.12-201ENST00000639868 649 ntBASIC1.05□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms