Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 USMG5P1-201ENST00000425964 177 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 RPL23AP95-201ENST00000426806 265 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.02□□□□□ -2.09
HOXD4P09016 Z98742.2-201ENST00000431564 187 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 AL603825.1-201ENST00000438481 80 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 RPL39P29-201ENST00000447779 157 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 ELOCP24-201ENST00000456370 334 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 AC112771.1-201ENST00000463581 102 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 AC097473.1-201ENST00000508142 408 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 AC005741.1-201ENST00000511094 432 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 SNORA25.11-201ENST00000515935 105 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 RNU4ATAC7P-201ENST00000516280 125 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 SCARNA16.2-201ENST00000516520 172 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.02□□□□□ -2.09
HOXD4P09016 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.02□□□□□ -2.09
HOXD4P09016 AC245884.12-201ENST00000615364 59 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 MIR6766-201ENST00000622641 72 ntBASIC2.02□□□□□ -2.09
HOXD4P09016 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.02□□□□□ -2.09
HOXD4P09016 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.02□□□□□ -2.09
HOXD4P09016 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
HOXD4P09016 MIR21-201ENST00000362134 72 ntBASIC2.01□□□□□ -2.09
HOXD4P09016 Y_RNA.48-201ENST00000362710 103 ntBASIC2.01□□□□□ -2.09
HOXD4P09016 RNU6-784P-201ENST00000384330 106 ntBASIC2.01□□□□□ -2.09
HOXD4P09016 RNU6-1222P-201ENST00000384615 107 ntBASIC2.01□□□□□ -2.09
HOXD4P09016 AL591034.2-201ENST00000402839 359 ntBASIC2.01□□□□□ -2.09
HOXD4P09016 AL355497.1-201ENST00000406262 551 ntBASIC2.01□□□□□ -2.09
HOXD4P09016 RNU2-23P-201ENST00000410545 195 ntBASIC2.01□□□□□ -2.09
HOXD4P09016 AC138623.1-201ENST00000418060 216 ntBASIC2.01□□□□□ -2.09
HOXD4P09016 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.01□□□□□ -2.09
HOXD4P09016 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC2.01□□□□□ -2.09
HOXD4P09016 RPS15AP28-201ENST00000435088 386 ntBASIC2.01□□□□□ -2.09
HOXD4P09016 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.01□□□□□ -2.09
HOXD4P09016 AC079354.2-201ENST00000453523 154 ntBASIC2.01□□□□□ -2.09
HOXD4P09016 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.01□□□□□ -2.09
HOXD4P09016 RPL23AP42-201ENST00000471152 471 ntBASIC2.01□□□□□ -2.09
HOXD4P09016 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.01□□□□□ -2.09
HOXD4P09016 AC093303.1-201ENST00000514549 295 ntBASIC2.01□□□□□ -2.09
HOXD4P09016 RNU6-548P-201ENST00000517083 115 ntBASIC2.01□□□□□ -2.09
HOXD4P09016 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC2.01□□□□□ -2.09
HOXD4P09016 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.01□□□□□ -2.09
HOXD4P09016 AC080078.3-201ENST00000605407 463 ntBASIC2.01□□□□□ -2.09
HOXD4P09016 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.01□□□□□ -2.09
HOXD4P09016 AC009318.2-201ENST00000610917 651 ntBASIC2.01□□□□□ -2.09
HOXD4P09016 SNORA43.4-201ENST00000629559 138 ntBASIC2.01□□□□□ -2.09
HOXD4P09016 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
HOXD4P09016 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.01□□□□□ -2.09
HOXD4P09016 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2□□□□□ -2.09
HOXD4P09016 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
HOXD4P09016 RNU6-212P-201ENST00000362642 104 ntBASIC2□□□□□ -2.09
HOXD4P09016 Y_RNA.40-201ENST00000362645 93 ntBASIC2□□□□□ -2.09
HOXD4P09016 RNU6-1010P-201ENST00000362757 107 ntBASIC2□□□□□ -2.09
HOXD4P09016 RNU6-1141P-201ENST00000364520 107 ntBASIC2□□□□□ -2.09
HOXD4P09016 U3.13-201ENST00000364804 214 ntBASIC2□□□□□ -2.09
HOXD4P09016 Y_RNA.315-201ENST00000365117 102 ntBASIC2□□□□□ -2.09
HOXD4P09016 Y_RNA.431-201ENST00000384086 102 ntBASIC2□□□□□ -2.09
HOXD4P09016 Y_RNA.533-201ENST00000384596 114 ntBASIC2□□□□□ -2.09
HOXD4P09016 5S_rRNA.2-201ENST00000391293 112 ntBASIC2□□□□□ -2.09
HOXD4P09016 SNORA75.6-201ENST00000391318 127 ntBASIC2□□□□□ -2.09
HOXD4P09016 SNORA11.4-201ENST00000408823 129 ntBASIC2□□□□□ -2.09
HOXD4P09016 CYCSP48-201ENST00000417124 323 ntBASIC2□□□□□ -2.09
HOXD4P09016 AC243428.1-201ENST00000421099 264 ntBASIC2□□□□□ -2.09
HOXD4P09016 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC2□□□□□ -2.09
HOXD4P09016 EIF4EP2-201ENST00000422816 654 ntBASIC2□□□□□ -2.09
HOXD4P09016 MTND1P14-201ENST00000427400 950 ntBASIC2□□□□□ -2.09
HOXD4P09016 AL139109.1-201ENST00000455491 297 ntBASIC2□□□□□ -2.09
HOXD4P09016 RPL36AP48-201ENST00000485521 314 ntBASIC2□□□□□ -2.09
HOXD4P09016 RPS27P21-201ENST00000486977 252 ntBASIC2□□□□□ -2.09
HOXD4P09016 SMURF2P1-201ENST00000514992 481 ntBASIC2□□□□□ -2.09
HOXD4P09016 RNU6-120P-201ENST00000516077 103 ntBASIC2□□□□□ -2.09
HOXD4P09016 RNU6-1153P-201ENST00000516760 105 ntBASIC2□□□□□ -2.09
HOXD4P09016 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC2□□□□□ -2.09
HOXD4P09016 CBX3P8-201ENST00000532412 525 ntBASIC2□□□□□ -2.09
HOXD4P09016 AC079598.5-201ENST00000547460 117 ntBASIC2□□□□□ -2.09
HOXD4P09016 HSPE1P4-201ENST00000550617 308 ntBASIC2□□□□□ -2.09
HOXD4P09016 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2□□□□□ -2.09
HOXD4P09016 MIR4273-201ENST00000582824 84 ntBASIC2□□□□□ -2.09
HOXD4P09016 AC096772.1-201ENST00000609146 564 ntBASIC2□□□□□ -2.09
HOXD4P09016 AL159153.1-201ENST00000619688 317 ntBASIC2□□□□□ -2.09
HOXD4P09016 AC009831.4-201ENST00000620744 325 ntBASIC2□□□□□ -2.09
HOXD4P09016 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2□□□□□ -2.09
HOXD4P09016 MTND4P1-201ENST00000457501 1466 ntBASIC2□□□□□ -2.09
HOXD4P09016 ZNF355P-201ENST00000427301 3216 ntBASIC2□□□□□ -2.09
HOXD4P09016 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC1.99□□□□□ -2.09
HOXD4P09016 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
HOXD4P09016 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
HOXD4P09016 SNORD114-19-201ENST00000363072 75 ntBASIC1.99□□□□□ -2.09
HOXD4P09016 RNU6-529P-201ENST00000363383 104 ntBASIC1.99□□□□□ -2.09
HOXD4P09016 RNU6-1285P-201ENST00000363480 105 ntBASIC1.99□□□□□ -2.09
HOXD4P09016 Y_RNA.187-201ENST00000363918 113 ntBASIC1.99□□□□□ -2.09
HOXD4P09016 RNU4-76P-201ENST00000364509 141 ntBASIC1.99□□□□□ -2.09
HOXD4P09016 RNA5SP138-201ENST00000365098 114 ntBASIC1.99□□□□□ -2.09
HOXD4P09016 MIR221-201ENST00000385135 110 ntBASIC1.99□□□□□ -2.09
HOXD4P09016 RN7SKP61-201ENST00000410642 295 ntBASIC1.99□□□□□ -2.09
HOXD4P09016 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.99□□□□□ -2.09
HOXD4P09016 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.99□□□□□ -2.09
HOXD4P09016 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
HOXD4P09016 MIR2053-201ENST00000459295 91 ntBASIC1.99□□□□□ -2.09
HOXD4P09016 AC027575.1-201ENST00000481064 460 ntBASIC1.99□□□□□ -2.09
HOXD4P09016 AC022447.4-201ENST00000504053 364 ntBASIC1.99□□□□□ -2.09
HOXD4P09016 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 138.9 ms