Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AL627230.6-201ENST00000611129 280 ntBASIC1.98□□□□□ -2.09
SIX3O95343 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.98□□□□□ -2.09
SIX3O95343 MIR8076-201ENST00000611401 83 ntBASIC1.98□□□□□ -2.09
SIX3O95343 Y_RNA.783-201ENST00000613546 102 ntBASIC1.98□□□□□ -2.09
SIX3O95343 AC005296.1-201ENST00000616145 209 ntBASIC1.98□□□□□ -2.09
SIX3O95343 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
SIX3O95343 AL359851.1-201ENST00000569460 4997 ntBASIC1.97□□□□□ -2.09
SIX3O95343 MTND4P1-201ENST00000457501 1466 ntBASIC1.97□□□□□ -2.09
SIX3O95343 Y_RNA.3-201ENST00000362331 103 ntBASIC1.97□□□□□ -2.09
SIX3O95343 RNU6-451P-201ENST00000362921 107 ntBASIC1.97□□□□□ -2.09
SIX3O95343 RNU6-254P-201ENST00000363377 107 ntBASIC1.97□□□□□ -2.09
SIX3O95343 SNORA29-201ENST00000384183 140 ntBASIC1.97□□□□□ -2.09
SIX3O95343 RNU6-1215P-201ENST00000384441 102 ntBASIC1.97□□□□□ -2.09
SIX3O95343 Y_RNA.530-201ENST00000384587 101 ntBASIC1.97□□□□□ -2.09
SIX3O95343 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
SIX3O95343 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
SIX3O95343 SNORA26.9-201ENST00000391322 122 ntBASIC1.97□□□□□ -2.09
SIX3O95343 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.97□□□□□ -2.09
SIX3O95343 MIR1283-2-201ENST00000408621 87 ntBASIC1.97□□□□□ -2.09
SIX3O95343 VN1R36P-201ENST00000414936 291 ntBASIC1.97□□□□□ -2.09
SIX3O95343 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.97□□□□□ -2.09
SIX3O95343 MTND2P29-201ENST00000438595 412 ntBASIC1.97□□□□□ -2.09
SIX3O95343 PCMTD1P1-201ENST00000455560 355 ntBASIC1.97□□□□□ -2.09
SIX3O95343 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.97□□□□□ -2.09
SIX3O95343 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC1.97□□□□□ -2.09
SIX3O95343 RNU6-720P-201ENST00000516363 108 ntBASIC1.97□□□□□ -2.09
SIX3O95343 RNU6-1098P-201ENST00000516772 96 ntBASIC1.97□□□□□ -2.09
SIX3O95343 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.97□□□□□ -2.09
SIX3O95343 RPL17P51-201ENST00000605218 238 ntBASIC1.97□□□□□ -2.09
SIX3O95343 AL590240.4-201ENST00000616908 390 ntBASIC1.97□□□□□ -2.09
SIX3O95343 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.97□□□□□ -2.09
SIX3O95343 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.97□□□□□ -2.09
SIX3O95343 AL450472.1-202ENST00000637286 180 ntBASIC1.97□□□□□ -2.09
SIX3O95343 LINC02555-201ENST00000563933 1951 ntBASIC1.97□□□□□ -2.09
SIX3O95343 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.96□□□□□ -2.09
SIX3O95343 Y_RNA.132-201ENST00000363421 102 ntBASIC1.96□□□□□ -2.1
SIX3O95343 Y_RNA.295-201ENST00000364918 102 ntBASIC1.96□□□□□ -2.1
SIX3O95343 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.96□□□□□ -2.1
SIX3O95343 SNORA32.2-201ENST00000384049 122 ntBASIC1.96□□□□□ -2.1
SIX3O95343 AC123900.1-201ENST00000420390 96 ntBASIC1.96□□□□□ -2.1
SIX3O95343 RPL23AP3-201ENST00000453844 468 ntBASIC1.96□□□□□ -2.1
SIX3O95343 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.96□□□□□ -2.1
SIX3O95343 HMGN2P26-201ENST00000463169 339 ntBASIC1.96□□□□□ -2.1
SIX3O95343 RPS29P27-201ENST00000463711 170 ntBASIC1.96□□□□□ -2.1
SIX3O95343 AC005840.1-201ENST00000498412 377 ntBASIC1.96□□□□□ -2.1
SIX3O95343 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.96□□□□□ -2.1
SIX3O95343 RNU6-295P-201ENST00000516901 104 ntBASIC1.96□□□□□ -2.1
SIX3O95343 MIR5089-201ENST00000580047 84 ntBASIC1.96□□□□□ -2.1
SIX3O95343 CTHRC1P1-201ENST00000605383 469 ntBASIC1.96□□□□□ -2.1
SIX3O95343 AL359821.1-201ENST00000605519 182 ntBASIC1.96□□□□□ -2.1
SIX3O95343 MIR3976-201ENST00000606807 139 ntBASIC1.96□□□□□ -2.1
SIX3O95343 AL773524.1-201ENST00000614065 229 ntBASIC1.96□□□□□ -2.1
SIX3O95343 AC093913.1-201ENST00000614178 329 ntBASIC1.96□□□□□ -2.1
SIX3O95343 FAM157A-202ENST00000615155 405 ntBASIC1.96□□□□□ -2.1
SIX3O95343 AC091932.3-201ENST00000624223 323 ntBASIC1.96□□□□□ -2.1
SIX3O95343 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
SIX3O95343 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
SIX3O95343 Y_RNA.100-201ENST00000363141 102 ntBASIC1.95□□□□□ -2.1
SIX3O95343 Y_RNA.167-201ENST00000363735 109 ntBASIC1.95□□□□□ -2.1
SIX3O95343 RNA5SP493-201ENST00000364115 91 ntBASIC1.95□□□□□ -2.1
SIX3O95343 SNORA18.2-201ENST00000383865 132 ntBASIC1.95□□□□□ -2.1
SIX3O95343 RNU6-1286P-201ENST00000383871 107 ntBASIC1.95□□□□□ -2.1
SIX3O95343 RNU4-52P-201ENST00000384209 138 ntBASIC1.95□□□□□ -2.1
SIX3O95343 Y_RNA.453-201ENST00000384223 109 ntBASIC1.95□□□□□ -2.1
SIX3O95343 Y_RNA.554-201ENST00000384672 102 ntBASIC1.95□□□□□ -2.1
SIX3O95343 RNA5SP212-201ENST00000391223 107 ntBASIC1.95□□□□□ -2.1
SIX3O95343 MIR320B2-201ENST00000408479 138 ntBASIC1.95□□□□□ -2.1
SIX3O95343 AL356379.1-201ENST00000414105 126 ntBASIC1.95□□□□□ -2.1
SIX3O95343 AC244636.1-201ENST00000421152 228 ntBASIC1.95□□□□□ -2.1
SIX3O95343 AC139712.2-201ENST00000424302 339 ntBASIC1.95□□□□□ -2.1
SIX3O95343 AC007677.1-201ENST00000445757 515 ntBASIC1.95□□□□□ -2.1
SIX3O95343 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.95□□□□□ -2.1
SIX3O95343 MRPS17P9-201ENST00000511924 393 ntBASIC1.95□□□□□ -2.1
SIX3O95343 RNU6-273P-201ENST00000516937 96 ntBASIC1.95□□□□□ -2.1
SIX3O95343 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.95□□□□□ -2.1
SIX3O95343 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.95□□□□□ -2.1
SIX3O95343 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.95□□□□□ -2.1
SIX3O95343 POLR3GP2-201ENST00000588366 668 ntBASIC1.95□□□□□ -2.1
SIX3O95343 AC009994.1-201ENST00000606889 253 ntBASIC1.95□□□□□ -2.1
SIX3O95343 RMST_3.1-201ENST00000611651 109 ntBASIC1.95□□□□□ -2.1
SIX3O95343 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.95□□□□□ -2.1
SIX3O95343 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.95□□□□□ -2.1
SIX3O95343 AC100810.6-201ENST00000638068 285 ntBASIC1.95□□□□□ -2.1
SIX3O95343 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
SIX3O95343 AC009487.4-201ENST00000624969 3585 ntBASIC1.95□□□□□ -2.1
SIX3O95343 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.94□□□□□ -2.1
SIX3O95343 MIR378A-201ENST00000362177 66 ntBASIC1.94□□□□□ -2.1
SIX3O95343 Y_RNA.256-201ENST00000364594 104 ntBASIC1.94□□□□□ -2.1
SIX3O95343 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
SIX3O95343 RNA5SP501-201ENST00000410990 112 ntBASIC1.94□□□□□ -2.1
SIX3O95343 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
SIX3O95343 MTCO1P21-201ENST00000416634 589 ntBASIC1.94□□□□□ -2.1
SIX3O95343 POLR2J4-204ENST00000418424 324 ntBASIC1.94□□□□□ -2.1
SIX3O95343 SNRPEP10-201ENST00000420249 274 ntBASIC1.94□□□□□ -2.1
SIX3O95343 HMGN2P38-201ENST00000423806 265 ntBASIC1.94□□□□□ -2.1
SIX3O95343 USP9YP28-201ENST00000435142 589 ntBASIC1.94□□□□□ -2.1
SIX3O95343 AL035666.1-201ENST00000446195 348 ntBASIC1.94□□□□□ -2.1
SIX3O95343 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.94□□□□□ -2.1
SIX3O95343 ATP5EP1-201ENST00000510257 156 ntBASIC1.94□□□□□ -2.1
SIX3O95343 TRMT112P2-201ENST00000512910 132 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms