Protein–RNA interactions for Protein: O60481

ZIC3, Zinc finger protein ZIC 3, humanhuman

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC3O60481 AL356280.1-201ENST00000603614 379 ntBASIC2.36□□□□□ -2.03
ZIC3O60481 MPP6-209ENST00000625307 126 ntTSL 5 BASIC2.36□□□□□ -2.03
ZIC3O60481 AL606534.2-204ENST00000635008 178 ntBASIC2.36□□□□□ -2.03
ZIC3O60481 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.36□□□□□ -2.03
ZIC3O60481 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.36□□□□□ -2.03
ZIC3O60481 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
ZIC3O60481 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.36□□□□□ -2.03
ZIC3O60481 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
ZIC3O60481 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
ZIC3O60481 MTND5P16-201ENST00000460269 1703 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 Y_RNA.39-201ENST00000362620 98 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 RNA5SP68-201ENST00000363885 119 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 Y_RNA.319-201ENST00000365138 92 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 Y_RNA.358-201ENST00000365491 99 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 Y_RNA.557-201ENST00000384680 107 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 MIR29B2-201ENST00000385055 81 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 SNORA69.1-201ENST00000390904 137 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 Y_RNA.592-201ENST00000410274 109 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 RPL19P1-201ENST00000411635 428 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 AC096644.2-201ENST00000429278 159 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 AL160004.2-201ENST00000432935 350 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 U8.22-201ENST00000459141 133 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 AP000870.1-201ENST00000472927 406 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.35□□□□□ -2.03
ZIC3O60481 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.35□□□□□ -2.03
ZIC3O60481 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.35□□□□□ -2.03
ZIC3O60481 EIF4A1P12-201ENST00000551910 141 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.35□□□□□ -2.03
ZIC3O60481 AC090617.3-201ENST00000573670 475 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 MIR3117-201ENST00000584034 78 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 MIR3616-201ENST00000584070 92 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 AL670379.2-201ENST00000604983 252 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 AC016925.2-201ENST00000605108 242 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 AL138963.2-201ENST00000605137 226 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 AC040896.1-201ENST00000613819 479 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC2.35□□□□□ -2.03
ZIC3O60481 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.35□□□□□ -2.03
ZIC3O60481 MIR6733-201ENST00000635723 61 ntBASIC2.35□□□□□ -2.03
ZIC3O60481 RNU6-222P-201ENST00000362438 107 ntBASIC2.34□□□□□ -2.03
ZIC3O60481 Y_RNA.80-201ENST00000362996 102 ntBASIC2.34□□□□□ -2.03
ZIC3O60481 U3.9-201ENST00000363823 204 ntBASIC2.34□□□□□ -2.03
ZIC3O60481 SNORD32B-201ENST00000364460 84 ntBASIC2.34□□□□□ -2.03
ZIC3O60481 RNU6-1180P-201ENST00000364935 107 ntBASIC2.34□□□□□ -2.03
ZIC3O60481 Y_RNA.485-201ENST00000384395 102 ntBASIC2.34□□□□□ -2.03
ZIC3O60481 RNU6-1274P-201ENST00000384557 107 ntBASIC2.34□□□□□ -2.03
ZIC3O60481 RNU6-159P-201ENST00000391080 106 ntBASIC2.34□□□□□ -2.03
ZIC3O60481 RNU1-139P-201ENST00000391307 165 ntBASIC2.34□□□□□ -2.03
ZIC3O60481 MRPL42P3-201ENST00000401492 326 ntBASIC2.34□□□□□ -2.03
ZIC3O60481 Y_RNA.605-201ENST00000410577 105 ntBASIC2.34□□□□□ -2.03
ZIC3O60481 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.34□□□□□ -2.03
ZIC3O60481 RNU7-87P-201ENST00000459343 62 ntBASIC2.34□□□□□ -2.03
ZIC3O60481 RNU7-169P-201ENST00000459456 61 ntBASIC2.34□□□□□ -2.03
ZIC3O60481 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.34□□□□□ -2.03
ZIC3O60481 RNU6-475P-201ENST00000516073 104 ntBASIC2.34□□□□□ -2.03
ZIC3O60481 RNU6-1198P-201ENST00000516904 67 ntBASIC2.34□□□□□ -2.03
ZIC3O60481 GNAI2P1-201ENST00000541815 315 ntBASIC2.34□□□□□ -2.03
ZIC3O60481 AC023043.3-201ENST00000593113 385 ntBASIC2.34□□□□□ -2.03
ZIC3O60481 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.34□□□□□ -2.03
ZIC3O60481 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.34□□□□□ -2.04
ZIC3O60481 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.34□□□□□ -2.04
ZIC3O60481 MTND4P1-201ENST00000457501 1466 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.33□□□□□ -2.04
ZIC3O60481 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.33□□□□□ -2.04
ZIC3O60481 AL136360.1-201ENST00000503377 1900 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 RNU1-109P-201ENST00000383960 147 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 Y_RNA.500-201ENST00000384466 111 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 MIR10B-201ENST00000385011 110 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 MIR95-201ENST00000385072 81 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 Y_RNA.645-201ENST00000391229 102 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 RNU2-25P-201ENST00000411041 191 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 EIF1P2-201ENST00000428233 350 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 USP9YP16-201ENST00000430287 407 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 AL445687.1-201ENST00000439946 251 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.33□□□□□ -2.04
ZIC3O60481 EEF1B2P7-201ENST00000451177 676 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 USP9YP23-201ENST00000455085 407 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 AC112492.4-201ENST00000456549 352 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 UBE2DNL-203ENST00000474922 222 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 RN7SL297P-201ENST00000483161 293 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.33□□□□□ -2.04
ZIC3O60481 RNU6-1114P-201ENST00000516022 107 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 RNA5SP54-201ENST00000516951 92 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 RNU6-586P-201ENST00000517265 104 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 VN1R91P-201ENST00000594377 169 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 AC016727.2-201ENST00000603988 621 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 MIR6817-201ENST00000615588 66 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 U2.1-201ENST00000618978 145 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 AC090517.3-201ENST00000625170 141 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 AC243829.7-201ENST00000633081 225 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.33□□□□□ -2.04
ZIC3O60481 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
ZIC3O60481 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
ZIC3O60481 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
ZIC3O60481 BX322639.1-202ENST00000423987 2213 ntBASIC2.33□□□□□ -2.04
ZIC3O60481 ZNF72P-201ENST00000425869 1908 ntBASIC2.32□□□□□ -2.04
ZIC3O60481 AC091812.1-201ENST00000432235 1948 ntBASIC2.32□□□□□ -2.04
ZIC3O60481 AC005592.1-201ENST00000566527 1640 ntBASIC2.32□□□□□ -2.04
ZIC3O60481 Y_RNA.158-201ENST00000363651 101 ntBASIC2.32□□□□□ -2.04
ZIC3O60481 AC117470.1-201ENST00000381974 330 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms