Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.43□□□□□ -2.02
HOXC11O43248 MIR6840-201ENST00000611937 71 ntBASIC2.43□□□□□ -2.02
HOXC11O43248 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC2.43□□□□□ -2.02
HOXC11O43248 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.43□□□□□ -2.02
HOXC11O43248 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.43□□□□□ -2.02
HOXC11O43248 PISRT1.1-201ENST00000616930 107 ntBASIC2.43□□□□□ -2.02
HOXC11O43248 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.43□□□□□ -2.02
HOXC11O43248 TPTEP1-208ENST00000636884 213 ntBASIC2.43□□□□□ -2.02
HOXC11O43248 Y_RNA.2-201ENST00000362330 96 ntBASIC2.42□□□□□ -2.02
HOXC11O43248 RNU6-1059P-201ENST00000363752 98 ntBASIC2.42□□□□□ -2.02
HOXC11O43248 SNORD81.2-201ENST00000365153 76 ntBASIC2.42□□□□□ -2.02
HOXC11O43248 Y_RNA.339-201ENST00000365325 102 ntBASIC2.42□□□□□ -2.02
HOXC11O43248 Y_RNA.390-201ENST00000383932 102 ntBASIC2.42□□□□□ -2.02
HOXC11O43248 RNU6-1050P-201ENST00000410388 107 ntBASIC2.42□□□□□ -2.02
HOXC11O43248 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.42□□□□□ -2.02
HOXC11O43248 snoU13.30-201ENST00000458951 104 ntBASIC2.42□□□□□ -2.02
HOXC11O43248 RPS29P21-201ENST00000496272 170 ntBASIC2.42□□□□□ -2.02
HOXC11O43248 RNU6-1198P-201ENST00000516904 67 ntBASIC2.42□□□□□ -2.02
HOXC11O43248 Y_RNA.708-201ENST00000516950 96 ntBASIC2.42□□□□□ -2.02
HOXC11O43248 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.42□□□□□ -2.02
HOXC11O43248 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC2.42□□□□□ -2.02
HOXC11O43248 PRELID2P1-201ENST00000552837 301 ntBASIC2.42□□□□□ -2.02
HOXC11O43248 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.42□□□□□ -2.02
HOXC11O43248 MIR5696-201ENST00000578474 85 ntBASIC2.42□□□□□ -2.02
HOXC11O43248 MIR3124-201ENST00000582636 67 ntBASIC2.42□□□□□ -2.02
HOXC11O43248 MIR5007-201ENST00000583098 95 ntBASIC2.42□□□□□ -2.02
HOXC11O43248 AC104984.5-201ENST00000586878 94 ntBASIC2.42□□□□□ -2.02
HOXC11O43248 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.42□□□□□ -2.02
HOXC11O43248 SNRPGP20-201ENST00000604477 205 ntBASIC2.42□□□□□ -2.02
HOXC11O43248 AC005562.2-201ENST00000618264 111 ntBASIC2.42□□□□□ -2.02
HOXC11O43248 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
HOXC11O43248 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
HOXC11O43248 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.41□□□□□ -2.02
HOXC11O43248 ZNF299P-201ENST00000406845 1804 ntBASIC2.41□□□□□ -2.02
HOXC11O43248 Y_RNA.99-201ENST00000363138 105 ntBASIC2.41□□□□□ -2.02
HOXC11O43248 Y_RNA.184-201ENST00000363884 108 ntBASIC2.41□□□□□ -2.02
HOXC11O43248 SNORD114-30-201ENST00000364448 72 ntBASIC2.41□□□□□ -2.02
HOXC11O43248 SNORA18.2-201ENST00000383865 132 ntBASIC2.41□□□□□ -2.02
HOXC11O43248 Y_RNA.533-201ENST00000384596 114 ntBASIC2.41□□□□□ -2.02
HOXC11O43248 MIR32-201ENST00000384965 70 ntBASIC2.41□□□□□ -2.02
HOXC11O43248 MIR153-2-201ENST00000385225 87 ntBASIC2.41□□□□□ -2.02
HOXC11O43248 HMGN2P39-201ENST00000398005 273 ntBASIC2.41□□□□□ -2.02
HOXC11O43248 MIR1262-201ENST00000408276 93 ntBASIC2.41□□□□□ -2.02
HOXC11O43248 PDCL2P1-201ENST00000419302 352 ntBASIC2.41□□□□□ -2.02
HOXC11O43248 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.41□□□□□ -2.02
HOXC11O43248 RPS12P2-201ENST00000439728 269 ntBASIC2.41□□□□□ -2.02
HOXC11O43248 AL035666.1-201ENST00000446195 348 ntBASIC2.41□□□□□ -2.02
HOXC11O43248 Y_RNA.635-201ENST00000459041 101 ntBASIC2.41□□□□□ -2.02
HOXC11O43248 RN7SKP210-201ENST00000459176 261 ntBASIC2.41□□□□□ -2.02
HOXC11O43248 HMGN1P12-201ENST00000499125 195 ntBASIC2.41□□□□□ -2.02
HOXC11O43248 RNU6-1098P-201ENST00000516772 96 ntBASIC2.41□□□□□ -2.02
HOXC11O43248 SNORA31.25-201ENST00000517242 134 ntBASIC2.41□□□□□ -2.02
HOXC11O43248 AC005730.3-201ENST00000583067 366 ntBASIC2.41□□□□□ -2.02
HOXC11O43248 AC011494.1-201ENST00000596454 237 ntBASIC2.41□□□□□ -2.02
HOXC11O43248 AC016727.2-201ENST00000603988 621 ntBASIC2.41□□□□□ -2.02
HOXC11O43248 RMST_6.1-201ENST00000611980 203 ntBASIC2.41□□□□□ -2.02
HOXC11O43248 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.41□□□□□ -2.02
HOXC11O43248 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.41□□□□□ -2.02
HOXC11O43248 Y_RNA.88-201ENST00000363029 99 ntBASIC2.4□□□□□ -2.03
HOXC11O43248 SNORD115-32-201ENST00000364079 82 ntBASIC2.4□□□□□ -2.03
HOXC11O43248 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC2.4□□□□□ -2.03
HOXC11O43248 AC026782.1-201ENST00000512952 449 ntBASIC2.4□□□□□ -2.03
HOXC11O43248 RNU7-175P-201ENST00000515915 61 ntBASIC2.4□□□□□ -2.03
HOXC11O43248 RNU4ATAC7P-201ENST00000516280 125 ntBASIC2.4□□□□□ -2.03
HOXC11O43248 RNU2-44P-201ENST00000516795 194 ntBASIC2.4□□□□□ -2.03
HOXC11O43248 RNA5SP54-201ENST00000516951 92 ntBASIC2.4□□□□□ -2.03
HOXC11O43248 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.4□□□□□ -2.03
HOXC11O43248 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.4□□□□□ -2.03
HOXC11O43248 AP001094.1-201ENST00000579805 193 ntBASIC2.4□□□□□ -2.03
HOXC11O43248 MIR4648-201ENST00000580107 72 ntBASIC2.4□□□□□ -2.03
HOXC11O43248 AC007229.1-201ENST00000590455 412 ntBASIC2.4□□□□□ -2.03
HOXC11O43248 AL355073.2-201ENST00000612106 557 ntBASIC2.4□□□□□ -2.03
HOXC11O43248 TCL6_2.1-201ENST00000615162 119 ntBASIC2.4□□□□□ -2.03
HOXC11O43248 MIR6715A-201ENST00000615929 79 ntBASIC2.4□□□□□ -2.03
HOXC11O43248 AC130454.1-201ENST00000622948 401 ntBASIC2.4□□□□□ -2.03
HOXC11O43248 AL359697.1-201ENST00000624879 587 ntBASIC2.4□□□□□ -2.03
HOXC11O43248 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.4□□□□□ -2.03
HOXC11O43248 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.39□□□□□ -2.03
HOXC11O43248 MTND5P6-201ENST00000422338 1798 ntBASIC2.39□□□□□ -2.03
HOXC11O43248 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.39□□□□□ -2.03
HOXC11O43248 RNU1-76P-201ENST00000362903 159 ntBASIC2.39□□□□□ -2.03
HOXC11O43248 SNORA72.1-201ENST00000363485 129 ntBASIC2.39□□□□□ -2.03
HOXC11O43248 RNU6-842P-201ENST00000384269 107 ntBASIC2.39□□□□□ -2.03
HOXC11O43248 Y_RNA.490-201ENST00000384413 102 ntBASIC2.39□□□□□ -2.03
HOXC11O43248 RNU6-541P-201ENST00000384709 110 ntBASIC2.39□□□□□ -2.03
HOXC11O43248 Y_RNA.594-201ENST00000410373 140 ntBASIC2.39□□□□□ -2.03
HOXC11O43248 DPH3P2-201ENST00000422618 250 ntBASIC2.39□□□□□ -2.03
HOXC11O43248 AC004386.2-201ENST00000441858 148 ntBASIC2.39□□□□□ -2.03
HOXC11O43248 AC010095.1-201ENST00000443543 144 ntBASIC2.39□□□□□ -2.03
HOXC11O43248 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.39□□□□□ -2.03
HOXC11O43248 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.39□□□□□ -2.03
HOXC11O43248 AL117351.2-201ENST00000513571 157 ntBASIC2.39□□□□□ -2.03
HOXC11O43248 Y_RNA.691-201ENST00000516611 103 ntBASIC2.39□□□□□ -2.03
HOXC11O43248 IGKV3-31-201ENST00000523109 329 ntBASIC2.39□□□□□ -2.03
HOXC11O43248 AL590705.4-201ENST00000532209 134 ntBASIC2.39□□□□□ -2.03
HOXC11O43248 MIR5006-201ENST00000583027 110 ntBASIC2.39□□□□□ -2.03
HOXC11O43248 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.39□□□□□ -2.03
HOXC11O43248 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.39□□□□□ -2.03
HOXC11O43248 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC2.39□□□□□ -2.03
HOXC11O43248 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms