Protein–RNA interactions for Protein: Q9Y5X4

NR2E3, Photoreceptor-specific nuclear receptor, humanhuman

Predictions only

Length 410 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR2E3Q9Y5X4 U8.9-201ENST00000365667 134 ntBASIC3.18□□□□□ -1.9
NR2E3Q9Y5X4 SET-203ENST00000372688 801 ntTSL 2 BASIC3.18□□□□□ -1.9
NR2E3Q9Y5X4 RNU6-1286P-201ENST00000383871 107 ntBASIC3.18□□□□□ -1.9
NR2E3Q9Y5X4 RNU6-968P-201ENST00000384076 107 ntBASIC3.18□□□□□ -1.9
NR2E3Q9Y5X4 Y_RNA.452-201ENST00000384202 108 ntBASIC3.18□□□□□ -1.9
NR2E3Q9Y5X4 SAR1AP2-201ENST00000392696 594 ntBASIC3.18□□□□□ -1.9
NR2E3Q9Y5X4 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.18□□□□□ -1.9
NR2E3Q9Y5X4 AC114482.1-201ENST00000418010 247 ntBASIC3.18□□□□□ -1.9
NR2E3Q9Y5X4 AC244670.1-201ENST00000436879 112 ntBASIC3.18□□□□□ -1.9
NR2E3Q9Y5X4 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.18□□□□□ -1.9
NR2E3Q9Y5X4 RN7SL20P-201ENST00000488827 297 ntBASIC3.18□□□□□ -1.9
NR2E3Q9Y5X4 AC091874.1-201ENST00000511402 339 ntBASIC3.18□□□□□ -1.9
NR2E3Q9Y5X4 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.18□□□□□ -1.9
NR2E3Q9Y5X4 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.18□□□□□ -1.9
NR2E3Q9Y5X4 AC008739.2-201ENST00000597006 317 ntBASIC3.18□□□□□ -1.9
NR2E3Q9Y5X4 AL159153.1-201ENST00000619688 317 ntBASIC3.18□□□□□ -1.9
NR2E3Q9Y5X4 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.18□□□□□ -1.9
NR2E3Q9Y5X4 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.18□□□□□ -1.9
NR2E3Q9Y5X4 AL359854.1-201ENST00000614203 1594 ntBASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 Y_RNA.389-201ENST00000383924 113 ntBASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 RNU6-505P-201ENST00000384427 107 ntBASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 RNU6ATAC37P-201ENST00000408328 131 ntBASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 RNU6-1140P-201ENST00000410517 106 ntBASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 RNA5SP494-201ENST00000410653 129 ntBASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 RPS3P1-201ENST00000456781 192 ntBASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 SNRPGP7-201ENST00000469016 106 ntBASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 RPL36AP48-201ENST00000485521 314 ntBASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 RPL30P10-201ENST00000488148 337 ntBASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 RPL22P13-201ENST00000493291 347 ntBASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 AC096725.1-201ENST00000514266 313 ntBASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 SNORA31.6-201ENST00000516241 130 ntBASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 SNORA40.14-201ENST00000516543 86 ntBASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 IGHVII-53-1-201ENST00000519538 255 ntBASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 AC079598.5-201ENST00000547460 117 ntBASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 AC004584.2-201ENST00000570407 410 ntBASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 MIR3149-201ENST00000584629 83 ntBASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 AL133393.1-201ENST00000603277 287 ntBASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 PRR13P7-201ENST00000605538 430 ntBASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 SNORA43.4-201ENST00000629559 138 ntBASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 AC233981.2-201ENST00000611524 1614 ntBASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.17□□□□□ -1.9
NR2E3Q9Y5X4 Y_RNA.504-201ENST00000384481 104 ntBASIC3.16□□□□□ -1.9
NR2E3Q9Y5X4 Y_RNA.574-201ENST00000384766 95 ntBASIC3.16□□□□□ -1.9
NR2E3Q9Y5X4 RNA5SP425-201ENST00000410336 112 ntBASIC3.16□□□□□ -1.9
NR2E3Q9Y5X4 RPL32P35-201ENST00000415214 394 ntBASIC3.16□□□□□ -1.9
NR2E3Q9Y5X4 AL135786.1-201ENST00000415892 214 ntBASIC3.16□□□□□ -1.9
NR2E3Q9Y5X4 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC3.16□□□□□ -1.9
NR2E3Q9Y5X4 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.16□□□□□ -1.9
NR2E3Q9Y5X4 RN7SKP210-201ENST00000459176 261 ntBASIC3.16□□□□□ -1.9
NR2E3Q9Y5X4 snoU13.14-201ENST00000459372 104 ntBASIC3.16□□□□□ -1.9
NR2E3Q9Y5X4 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.16□□□□□ -1.9
NR2E3Q9Y5X4 SEM1P1-201ENST00000506694 209 ntBASIC3.16□□□□□ -1.9
NR2E3Q9Y5X4 SCARNA17.1-201ENST00000516211 143 ntBASIC3.16□□□□□ -1.9
NR2E3Q9Y5X4 SCARNA17.2-201ENST00000516334 143 ntBASIC3.16□□□□□ -1.9
NR2E3Q9Y5X4 AC022616.4-201ENST00000522985 181 ntBASIC3.16□□□□□ -1.9
NR2E3Q9Y5X4 AC007375.1-201ENST00000554513 578 ntBASIC3.16□□□□□ -1.9
NR2E3Q9Y5X4 7SK.7-201ENST00000603504 247 ntBASIC3.16□□□□□ -1.9
NR2E3Q9Y5X4 AL021879.1-201ENST00000611756 288 ntBASIC3.16□□□□□ -1.9
NR2E3Q9Y5X4 SCARNA17.4-201ENST00000614296 143 ntBASIC3.16□□□□□ -1.9
NR2E3Q9Y5X4 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
NR2E3Q9Y5X4 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.15□□□□□ -1.9
NR2E3Q9Y5X4 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.9
NR2E3Q9Y5X4 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 SNORA26.3-201ENST00000391119 136 ntBASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 RNU6-1109P-201ENST00000391187 107 ntBASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 AL138827.1-201ENST00000402666 306 ntBASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 RNU6-101P-201ENST00000410323 104 ntBASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 GPM6BP3-201ENST00000442797 145 ntBASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 AC112771.1-201ENST00000463581 102 ntBASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 RPS27AP9-201ENST00000477681 438 ntBASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 Y_RNA.721-201ENST00000517207 102 ntBASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 AL590705.4-201ENST00000532209 134 ntBASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 AC021231.3-201ENST00000558497 370 ntBASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 MIR5571-201ENST00000577998 113 ntBASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 MIR4648-201ENST00000580107 72 ntBASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 AL355297.3-201ENST00000604082 446 ntBASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 Z98751.3-201ENST00000604447 521 ntBASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 AC007318.2-201ENST00000620999 243 ntBASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 SCARNA4-201ENST00000629045 128 ntBASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 AC108206.1-201ENST00000570186 4159 ntBASIC3.15□□□□□ -1.91
NR2E3Q9Y5X4 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
NR2E3Q9Y5X4 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.14□□□□□ -1.91
NR2E3Q9Y5X4 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
NR2E3Q9Y5X4 AC073325.2-201ENST00000339545 159 ntBASIC3.14□□□□□ -1.91
NR2E3Q9Y5X4 RNU6-212P-201ENST00000362642 104 ntBASIC3.14□□□□□ -1.91
NR2E3Q9Y5X4 Y_RNA.149-201ENST00000363558 117 ntBASIC3.14□□□□□ -1.91
NR2E3Q9Y5X4 RNU4-9P-201ENST00000364951 139 ntBASIC3.14□□□□□ -1.91
NR2E3Q9Y5X4 Y_RNA.512-201ENST00000384518 102 ntBASIC3.14□□□□□ -1.91
NR2E3Q9Y5X4 MIR764-201ENST00000390811 85 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 153.7 ms