Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.03□□□□□ -1.93
PCDHA1Q9Y5I3 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.03□□□□□ -1.93
PCDHA1Q9Y5I3 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.02□□□□□ -1.93
PCDHA1Q9Y5I3 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
PCDHA1Q9Y5I3 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.02□□□□□ -1.93
PCDHA1Q9Y5I3 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.02□□□□□ -1.93
PCDHA1Q9Y5I3 AC091812.1-201ENST00000432235 1948 ntBASIC3.02□□□□□ -1.93
PCDHA1Q9Y5I3 RNU6-486P-201ENST00000363116 107 ntBASIC3.02□□□□□ -1.93
PCDHA1Q9Y5I3 Y_RNA.106-201ENST00000363189 100 ntBASIC3.02□□□□□ -1.93
PCDHA1Q9Y5I3 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC3.02□□□□□ -1.93
PCDHA1Q9Y5I3 AP000705.1-201ENST00000454567 350 ntBASIC3.02□□□□□ -1.93
PCDHA1Q9Y5I3 AC103975.1-201ENST00000482506 483 ntBASIC3.02□□□□□ -1.93
PCDHA1Q9Y5I3 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.02□□□□□ -1.93
PCDHA1Q9Y5I3 AC093852.1-201ENST00000503587 266 ntBASIC3.02□□□□□ -1.93
PCDHA1Q9Y5I3 ANXA2P1-201ENST00000505539 926 ntBASIC3.02□□□□□ -1.93
PCDHA1Q9Y5I3 RNA5SP282-201ENST00000516355 108 ntBASIC3.02□□□□□ -1.93
PCDHA1Q9Y5I3 RNU6-1198P-201ENST00000516904 67 ntBASIC3.02□□□□□ -1.93
PCDHA1Q9Y5I3 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.02□□□□□ -1.93
PCDHA1Q9Y5I3 AC091144.1-201ENST00000519573 138 ntBASIC3.02□□□□□ -1.93
PCDHA1Q9Y5I3 CYP4A27P-201ENST00000567218 190 ntBASIC3.02□□□□□ -1.93
PCDHA1Q9Y5I3 MIR3923-201ENST00000579521 83 ntBASIC3.02□□□□□ -1.93
PCDHA1Q9Y5I3 MIR5188-201ENST00000583467 113 ntBASIC3.02□□□□□ -1.93
PCDHA1Q9Y5I3 U2.1-201ENST00000618978 145 ntBASIC3.02□□□□□ -1.93
PCDHA1Q9Y5I3 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
PCDHA1Q9Y5I3 SNORD115-8-201ENST00000363856 82 ntBASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 RNY3P11-201ENST00000364153 102 ntBASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 SNORD115-38-201ENST00000365037 82 ntBASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 Y_RNA.485-201ENST00000384395 102 ntBASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 BMS1P22-201ENST00000414726 313 ntBASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 MTCO3P19-201ENST00000415864 321 ntBASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 RPS3P1-201ENST00000456781 192 ntBASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 TOMM22P6-201ENST00000465035 409 ntBASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 RNA5SP385-201ENST00000515947 110 ntBASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 RNU2-53P-201ENST00000516257 147 ntBASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 HSBP1P1-201ENST00000555205 166 ntBASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 AC090617.3-201ENST00000573670 475 ntBASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 AC103810.1-201ENST00000579873 453 ntBASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 MIR4506-201ENST00000584693 77 ntBASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 AL034555.1-201ENST00000604816 211 ntBASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 AL162373.1-201ENST00000620433 407 ntBASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 IGHVIII-44-202ENST00000636235 289 ntBASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
PCDHA1Q9Y5I3 AC092435.3-201ENST00000565538 3654 ntBASIC3□□□□□ -1.93
PCDHA1Q9Y5I3 RNA5SP68-201ENST00000363885 119 ntBASIC3□□□□□ -1.93
PCDHA1Q9Y5I3 AL590004.2-201ENST00000404787 371 ntBASIC3□□□□□ -1.93
PCDHA1Q9Y5I3 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC3□□□□□ -1.93
PCDHA1Q9Y5I3 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3□□□□□ -1.93
PCDHA1Q9Y5I3 AC114482.1-201ENST00000418010 247 ntBASIC3□□□□□ -1.93
PCDHA1Q9Y5I3 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3□□□□□ -1.93
PCDHA1Q9Y5I3 AC096644.2-201ENST00000429278 159 ntBASIC3□□□□□ -1.93
PCDHA1Q9Y5I3 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3□□□□□ -1.93
PCDHA1Q9Y5I3 RNU7-169P-201ENST00000459456 61 ntBASIC3□□□□□ -1.93
PCDHA1Q9Y5I3 RPL23AP70-201ENST00000483361 460 ntBASIC3□□□□□ -1.93
PCDHA1Q9Y5I3 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3□□□□□ -1.93
PCDHA1Q9Y5I3 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3□□□□□ -1.93
PCDHA1Q9Y5I3 AC022616.4-201ENST00000522985 181 ntBASIC3□□□□□ -1.93
PCDHA1Q9Y5I3 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC3□□□□□ -1.93
PCDHA1Q9Y5I3 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3□□□□□ -1.93
PCDHA1Q9Y5I3 AC027176.1-201ENST00000560204 514 ntBASIC3□□□□□ -1.93
PCDHA1Q9Y5I3 AC006600.1-201ENST00000572529 153 ntBASIC3□□□□□ -1.93
PCDHA1Q9Y5I3 AC078899.3-201ENST00000599065 212 ntBASIC3□□□□□ -1.93
PCDHA1Q9Y5I3 AC008737.2-201ENST00000599446 118 ntBASIC3□□□□□ -1.93
PCDHA1Q9Y5I3 AL138963.2-201ENST00000605137 226 ntBASIC3□□□□□ -1.93
PCDHA1Q9Y5I3 MIR6817-201ENST00000615588 66 ntBASIC3□□□□□ -1.93
PCDHA1Q9Y5I3 MIR7515-201ENST00000637837 67 ntBASIC3□□□□□ -1.93
PCDHA1Q9Y5I3 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
PCDHA1Q9Y5I3 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
PCDHA1Q9Y5I3 RNU4-82P-201ENST00000362443 140 ntBASIC2.99□□□□□ -1.93
PCDHA1Q9Y5I3 Y_RNA.358-201ENST00000365491 99 ntBASIC2.99□□□□□ -1.93
PCDHA1Q9Y5I3 SNORD14.1-201ENST00000365609 90 ntBASIC2.99□□□□□ -1.93
PCDHA1Q9Y5I3 RNU1-139P-201ENST00000391307 165 ntBASIC2.99□□□□□ -1.93
PCDHA1Q9Y5I3 RNU6-1328P-201ENST00000410938 106 ntBASIC2.99□□□□□ -1.93
PCDHA1Q9Y5I3 AC113618.1-201ENST00000416747 285 ntBASIC2.99□□□□□ -1.93
PCDHA1Q9Y5I3 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC2.99□□□□□ -1.93
PCDHA1Q9Y5I3 AC007215.1-201ENST00000464893 276 ntBASIC2.99□□□□□ -1.93
PCDHA1Q9Y5I3 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.99□□□□□ -1.93
PCDHA1Q9Y5I3 RNU6-764P-201ENST00000516396 105 ntBASIC2.99□□□□□ -1.93
PCDHA1Q9Y5I3 Y_RNA.720-201ENST00000517166 92 ntBASIC2.99□□□□□ -1.93
PCDHA1Q9Y5I3 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.99□□□□□ -1.93
PCDHA1Q9Y5I3 AC027288.2-201ENST00000553028 243 ntBASIC2.99□□□□□ -1.93
PCDHA1Q9Y5I3 AC010620.2-201ENST00000600135 313 ntBASIC2.99□□□□□ -1.93
PCDHA1Q9Y5I3 AC136443.5-201ENST00000603741 370 ntBASIC2.99□□□□□ -1.93
PCDHA1Q9Y5I3 AC107871.2-201ENST00000612894 502 ntBASIC2.99□□□□□ -1.93
PCDHA1Q9Y5I3 AL132822.1-201ENST00000617063 513 ntBASIC2.99□□□□□ -1.93
PCDHA1Q9Y5I3 MIR7157-201ENST00000635801 60 ntBASIC2.99□□□□□ -1.93
PCDHA1Q9Y5I3 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.99□□□□□ -1.93
PCDHA1Q9Y5I3 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
PCDHA1Q9Y5I3 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 RNU4-15P-201ENST00000362613 141 ntBASIC2.98□□□□□ -1.93
PCDHA1Q9Y5I3 Y_RNA.424-201ENST00000384063 103 ntBASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 142.4 ms