Protein–RNA interactions for Protein: Q9Y3E1

HDGFL3, Hepatoma-derived growth factor-related protein 3, humanhuman

Predictions only

Length 203 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3Q9Y3E1 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC0.69□□□□□ -2.3
HDGFL3Q9Y3E1 USP9YP28-201ENST00000435142 589 ntBASIC0.69□□□□□ -2.3
HDGFL3Q9Y3E1 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.69□□□□□ -2.3
HDGFL3Q9Y3E1 C1DP4-201ENST00000455429 424 ntBASIC0.69□□□□□ -2.3
HDGFL3Q9Y3E1 RPL39P38-201ENST00000467018 153 ntBASIC0.69□□□□□ -2.3
HDGFL3Q9Y3E1 AC008628.2-201ENST00000502605 298 ntBASIC0.69□□□□□ -2.3
HDGFL3Q9Y3E1 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
HDGFL3Q9Y3E1 Y_RNA.672-201ENST00000516289 104 ntBASIC0.69□□□□□ -2.3
HDGFL3Q9Y3E1 SCARNA16.2-201ENST00000516520 172 ntBASIC0.69□□□□□ -2.3
HDGFL3Q9Y3E1 AC090517.1-201ENST00000569307 266 ntBASIC0.69□□□□□ -2.3
HDGFL3Q9Y3E1 AC008088.1-201ENST00000580993 280 ntBASIC0.69□□□□□ -2.3
HDGFL3Q9Y3E1 MIR4653-201ENST00000585107 83 ntBASIC0.69□□□□□ -2.3
HDGFL3Q9Y3E1 AC064807.4-201ENST00000607201 407 ntBASIC0.69□□□□□ -2.3
HDGFL3Q9Y3E1 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC0.69□□□□□ -2.3
HDGFL3Q9Y3E1 AC009159.2-201ENST00000617603 606 ntBASIC0.69□□□□□ -2.3
HDGFL3Q9Y3E1 AC006927.3-201ENST00000638789 384 ntBASIC0.69□□□□□ -2.3
HDGFL3Q9Y3E1 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
HDGFL3Q9Y3E1 RNY1P12-201ENST00000364251 105 ntBASIC0.68□□□□□ -2.3
HDGFL3Q9Y3E1 HSFY7P-201ENST00000432672 318 ntBASIC0.68□□□□□ -2.3
HDGFL3Q9Y3E1 HSFY8P-201ENST00000437934 318 ntBASIC0.68□□□□□ -2.3
HDGFL3Q9Y3E1 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC0.68□□□□□ -2.3
HDGFL3Q9Y3E1 RPS4XP11-201ENST00000446897 772 ntBASIC0.68□□□□□ -2.3
HDGFL3Q9Y3E1 NAF1-205ENST00000509434 385 ntTSL 3 BASIC0.68□□□□□ -2.3
HDGFL3Q9Y3E1 AC091874.1-201ENST00000511402 339 ntBASIC0.68□□□□□ -2.3
HDGFL3Q9Y3E1 LRRC34P2-201ENST00000514850 553 ntBASIC0.68□□□□□ -2.3
HDGFL3Q9Y3E1 SNORA70.22-201ENST00000517160 124 ntBASIC0.68□□□□□ -2.3
HDGFL3Q9Y3E1 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.68□□□□□ -2.3
HDGFL3Q9Y3E1 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC0.68□□□□□ -2.3
HDGFL3Q9Y3E1 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC0.68□□□□□ -2.3
HDGFL3Q9Y3E1 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.68□□□□□ -2.3
HDGFL3Q9Y3E1 Z99289.3-201ENST00000605586 594 ntBASIC0.68□□□□□ -2.3
HDGFL3Q9Y3E1 AL021879.1-201ENST00000611756 288 ntBASIC0.68□□□□□ -2.3
HDGFL3Q9Y3E1 AL136221.1-201ENST00000621449 509 ntBASIC0.68□□□□□ -2.3
HDGFL3Q9Y3E1 AC011155.2-201ENST00000623202 216 ntBASIC0.68□□□□□ -2.3
HDGFL3Q9Y3E1 RNU6-545P-201ENST00000362681 104 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 SNORD113-6-201ENST00000363345 75 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 Y_RNA.191-201ENST00000363972 113 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 SNORA20.2-201ENST00000383922 131 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 MIR515-2-201ENST00000384883 83 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 MIR515-1-201ENST00000384884 83 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 MIR300-201ENST00000401138 83 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 RNU2-8P-201ENST00000410727 190 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 AC006461.1-201ENST00000412637 326 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 AL512286.1-201ENST00000439244 400 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 TAF9P1-201ENST00000445421 515 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 MTCYBP1-201ENST00000454315 1119 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 TAF9P2-201ENST00000454958 515 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 RNU7-34P-201ENST00000459394 64 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 MTCO2P6-201ENST00000463134 685 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 HMGN1P12-201ENST00000499125 195 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 AC091435.1-201ENST00000505442 584 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 ACA64.5-201ENST00000516207 127 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 RNU6-1178P-201ENST00000516674 107 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 AC022878.1-201ENST00000530684 149 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 FAM106DP-201ENST00000586416 501 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 AC091304.9-201ENST00000612091 226 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 AC008250.2-201ENST00000615261 205 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 AC009509.4-201ENST00000619202 509 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 SNORA43.4-201ENST00000629559 138 ntBASIC0.67□□□□□ -2.3
HDGFL3Q9Y3E1 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 RNU6-562P-201ENST00000362731 107 ntBASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 SNORA33-201ENST00000363664 130 ntBASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 SNORD114-22-201ENST00000365423 72 ntBASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 SNORA36A-201ENST00000384221 132 ntBASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 MIR208B-201ENST00000401172 77 ntBASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 PIGFP2-201ENST00000421400 651 ntBASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 RAB28P5-201ENST00000427490 651 ntBASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 HSPE1P13-201ENST00000451143 297 ntBASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 RAP1BP2-201ENST00000478270 544 ntBASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 MTCO3P7-201ENST00000510008 774 ntBASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 AC090572.1-201ENST00000519251 160 ntBASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 AC005771.1-201ENST00000585581 349 ntBASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 AC091805.2-201ENST00000603848 235 ntBASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 AC112191.3-201ENST00000604371 277 ntBASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 AP001836.1-201ENST00000604675 523 ntBASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 AP002371.2-201ENST00000624450 503 ntBASIC0.66□□□□□ -2.3
HDGFL3Q9Y3E1 AC018630.2-201ENST00000534866 2403 ntBASIC0.65□□□□□ -2.31
HDGFL3Q9Y3E1 snoU2-30.2-201ENST00000362805 70 ntBASIC0.65□□□□□ -2.31
HDGFL3Q9Y3E1 Y_RNA.504-201ENST00000384481 104 ntBASIC0.65□□□□□ -2.31
HDGFL3Q9Y3E1 MIR520E-201ENST00000384867 87 ntBASIC0.65□□□□□ -2.31
HDGFL3Q9Y3E1 MIR100-201ENST00000385259 80 ntBASIC0.65□□□□□ -2.31
HDGFL3Q9Y3E1 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.65□□□□□ -2.31
HDGFL3Q9Y3E1 MIR1283-1-201ENST00000408494 87 ntBASIC0.65□□□□□ -2.31
HDGFL3Q9Y3E1 AC114482.1-201ENST00000418010 247 ntBASIC0.65□□□□□ -2.31
HDGFL3Q9Y3E1 AC012306.1-201ENST00000423267 114 ntBASIC0.65□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 124.4 ms