Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.21□□□□□ -1.74
CCDC87Q9NVE4 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 MIR423-201ENST00000362201 94 ntBASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 SNORA72.2-201ENST00000365028 127 ntBASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 AP000567.1-201ENST00000406413 156 ntBASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 MIR1183-201ENST00000408856 89 ntBASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 RNU2-61P-201ENST00000411069 191 ntBASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 AC138623.1-201ENST00000418060 216 ntBASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 SETP5-201ENST00000437270 562 ntBASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 AL357552.1-201ENST00000445254 415 ntBASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 UQCRBP2-201ENST00000447827 297 ntBASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 SNORA27.4-201ENST00000516650 95 ntBASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 AP002392.1-201ENST00000537692 208 ntBASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 MIR4282-201ENST00000583613 67 ntBASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 AC068831.7-201ENST00000616954 363 ntBASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC87Q9NVE4 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC87Q9NVE4 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC87Q9NVE4 SNORD114-19-201ENST00000363072 75 ntBASIC4.19□□□□□ -1.74
CCDC87Q9NVE4 Y_RNA.292-201ENST00000364904 97 ntBASIC4.19□□□□□ -1.74
CCDC87Q9NVE4 RNU6-750P-201ENST00000390946 107 ntBASIC4.19□□□□□ -1.74
CCDC87Q9NVE4 MIR208B-201ENST00000401172 77 ntBASIC4.19□□□□□ -1.74
CCDC87Q9NVE4 Y_RNA.590-201ENST00000410140 107 ntBASIC4.19□□□□□ -1.74
CCDC87Q9NVE4 Y_RNA.626-201ENST00000411288 95 ntBASIC4.19□□□□□ -1.74
CCDC87Q9NVE4 snoU13.14-201ENST00000459372 104 ntBASIC4.19□□□□□ -1.74
CCDC87Q9NVE4 RNU6-625P-201ENST00000459412 107 ntBASIC4.19□□□□□ -1.74
CCDC87Q9NVE4 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC87Q9NVE4 RNU5F-2P-201ENST00000516066 82 ntBASIC4.19□□□□□ -1.74
CCDC87Q9NVE4 Y_RNA.679-201ENST00000516416 91 ntBASIC4.19□□□□□ -1.74
CCDC87Q9NVE4 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC4.19□□□□□ -1.74
CCDC87Q9NVE4 AC018448.1-201ENST00000552843 316 ntBASIC4.19□□□□□ -1.74
CCDC87Q9NVE4 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC4.19□□□□□ -1.74
CCDC87Q9NVE4 AC010889.1-201ENST00000566193 2666 ntBASIC4.19□□□□□ -1.74
CCDC87Q9NVE4 AL353746.1-201ENST00000566293 6881 ntBASIC4.19□□□□□ -1.74
CCDC87Q9NVE4 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.19□□□□□ -1.74
CCDC87Q9NVE4 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC87Q9NVE4 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.19□□□□□ -1.74
CCDC87Q9NVE4 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC87Q9NVE4 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC87Q9NVE4 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 RNU1-70P-201ENST00000362618 164 ntBASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 Y_RNA.383-201ENST00000383855 97 ntBASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 Y_RNA.446-201ENST00000384178 104 ntBASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 Y_RNA.498-201ENST00000384460 102 ntBASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 MIR147B-201ENST00000390185 80 ntBASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 SNRPGP3-201ENST00000469405 227 ntBASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 AC091959.1-201ENST00000495857 238 ntBASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 SNORA70.19-201ENST00000516717 90 ntBASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 MIR4644-201ENST00000579929 84 ntBASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 AC104984.5-201ENST00000586878 94 ntBASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 AL357075.2-201ENST00000614906 189 ntBASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 AC006111.3-201ENST00000622137 383 ntBASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 AC018692.3-201ENST00000623929 123 ntBASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC4.18□□□□□ -1.74
CCDC87Q9NVE4 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.17□□□□□ -1.74
CCDC87Q9NVE4 AC006504.1-201ENST00000562493 3666 ntBASIC4.17□□□□□ -1.74
CCDC87Q9NVE4 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC4.17□□□□□ -1.74
CCDC87Q9NVE4 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC87Q9NVE4 AL513302.2-201ENST00000562313 1842 ntBASIC4.17□□□□□ -1.74
CCDC87Q9NVE4 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
CCDC87Q9NVE4 MIR449A-201ENST00000362113 91 ntBASIC4.17□□□□□ -1.74
CCDC87Q9NVE4 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
CCDC87Q9NVE4 AL512633.1-201ENST00000399931 655 ntBASIC4.17□□□□□ -1.74
CCDC87Q9NVE4 RNA5SP38-201ENST00000410750 119 ntBASIC4.17□□□□□ -1.74
CCDC87Q9NVE4 RHEBP3-201ENST00000411920 351 ntBASIC4.17□□□□□ -1.74
CCDC87Q9NVE4 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC87Q9NVE4 AL392103.1-201ENST00000447000 198 ntBASIC4.17□□□□□ -1.74
CCDC87Q9NVE4 RNU6-789P-201ENST00000517105 102 ntBASIC4.17□□□□□ -1.74
CCDC87Q9NVE4 AC024405.2-202ENST00000532731 184 ntBASIC4.17□□□□□ -1.74
CCDC87Q9NVE4 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC4.17□□□□□ -1.74
CCDC87Q9NVE4 AC026470.2-201ENST00000561492 181 ntBASIC4.17□□□□□ -1.74
CCDC87Q9NVE4 MZT1P2-201ENST00000604387 248 ntBASIC4.17□□□□□ -1.74
CCDC87Q9NVE4 AL034555.1-201ENST00000604816 211 ntBASIC4.17□□□□□ -1.74
CCDC87Q9NVE4 MIR486-1-201ENST00000612171 68 ntBASIC4.17□□□□□ -1.74
CCDC87Q9NVE4 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC4.17□□□□□ -1.74
CCDC87Q9NVE4 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC87Q9NVE4 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
CCDC87Q9NVE4 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC87Q9NVE4 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.16□□□□□ -1.74
CCDC87Q9NVE4 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms