Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 AC090960.1-201ENST00000421072 306 ntBASIC0.86□□□□□ -2.27
VCX3AQ9NNX9 AC010099.3-201ENST00000423896 409 ntBASIC0.86□□□□□ -2.27
VCX3AQ9NNX9 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC0.86□□□□□ -2.27
VCX3AQ9NNX9 HMGN2P34-201ENST00000437647 269 ntBASIC0.86□□□□□ -2.27
VCX3AQ9NNX9 AC093852.1-201ENST00000503587 266 ntBASIC0.86□□□□□ -2.27
VCX3AQ9NNX9 RNU2-34P-201ENST00000516534 121 ntBASIC0.86□□□□□ -2.27
VCX3AQ9NNX9 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC0.86□□□□□ -2.27
VCX3AQ9NNX9 DNAJC19P9-201ENST00000555084 351 ntBASIC0.86□□□□□ -2.27
VCX3AQ9NNX9 AC091544.4-201ENST00000555268 342 ntBASIC0.86□□□□□ -2.27
VCX3AQ9NNX9 MIR4421-201ENST00000578133 69 ntBASIC0.86□□□□□ -2.27
VCX3AQ9NNX9 AC245884.10-201ENST00000597355 337 ntBASIC0.86□□□□□ -2.27
VCX3AQ9NNX9 AL929325.1-201ENST00000603096 117 ntBASIC0.86□□□□□ -2.27
VCX3AQ9NNX9 CLPTM1LP1-201ENST00000604519 484 ntBASIC0.86□□□□□ -2.27
VCX3AQ9NNX9 Z84480.1-201ENST00000605131 311 ntBASIC0.86□□□□□ -2.27
VCX3AQ9NNX9 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.86□□□□□ -2.27
VCX3AQ9NNX9 AC012676.2-201ENST00000619258 186 ntBASIC0.86□□□□□ -2.27
VCX3AQ9NNX9 AL136221.1-201ENST00000621449 509 ntBASIC0.86□□□□□ -2.27
VCX3AQ9NNX9 MTND4P4-201ENST00000439033 1366 ntBASIC0.85□□□□□ -2.27
VCX3AQ9NNX9 RNU6-1123P-201ENST00000362347 106 ntBASIC0.85□□□□□ -2.27
VCX3AQ9NNX9 snoU2-30.2-201ENST00000362805 70 ntBASIC0.85□□□□□ -2.27
VCX3AQ9NNX9 SNORA72.2-201ENST00000365028 127 ntBASIC0.85□□□□□ -2.27
VCX3AQ9NNX9 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
VCX3AQ9NNX9 RPL21P1-201ENST00000399532 476 ntBASIC0.85□□□□□ -2.27
VCX3AQ9NNX9 AP000275.1-201ENST00000411943 390 ntBASIC0.85□□□□□ -2.27
VCX3AQ9NNX9 BTF3P4-201ENST00000418852 495 ntBASIC0.85□□□□□ -2.27
VCX3AQ9NNX9 MTCO2P34-201ENST00000421994 607 ntBASIC0.85□□□□□ -2.27
VCX3AQ9NNX9 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.85□□□□□ -2.27
VCX3AQ9NNX9 RPL31P35-201ENST00000431058 377 ntBASIC0.85□□□□□ -2.27
VCX3AQ9NNX9 AC009961.2-201ENST00000435771 251 ntBASIC0.85□□□□□ -2.27
VCX3AQ9NNX9 SCARNA18-201ENST00000459004 134 ntBASIC0.85□□□□□ -2.27
VCX3AQ9NNX9 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC0.85□□□□□ -2.27
VCX3AQ9NNX9 MIR4753-201ENST00000585119 83 ntBASIC0.85□□□□□ -2.27
VCX3AQ9NNX9 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC0.85□□□□□ -2.27
VCX3AQ9NNX9 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.85□□□□□ -2.27
VCX3AQ9NNX9 AC104458.1-201ENST00000608243 463 ntBASIC0.85□□□□□ -2.27
VCX3AQ9NNX9 AC021506.2-201ENST00000612354 169 ntBASIC0.85□□□□□ -2.27
VCX3AQ9NNX9 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.85□□□□□ -2.27
VCX3AQ9NNX9 SNORD114-2-201ENST00000363953 78 ntBASIC0.84□□□□□ -2.27
VCX3AQ9NNX9 RNU6-108P-201ENST00000365558 107 ntBASIC0.84□□□□□ -2.27
VCX3AQ9NNX9 MIR222-201ENST00000384992 110 ntBASIC0.84□□□□□ -2.27
VCX3AQ9NNX9 MTND3P17-201ENST00000416968 344 ntBASIC0.84□□□□□ -2.27
VCX3AQ9NNX9 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC0.84□□□□□ -2.27
VCX3AQ9NNX9 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC0.84□□□□□ -2.27
VCX3AQ9NNX9 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC0.84□□□□□ -2.27
VCX3AQ9NNX9 AL606517.2-201ENST00000442855 241 ntBASIC0.84□□□□□ -2.27
VCX3AQ9NNX9 ZNF736P12Y-201ENST00000443152 1243 ntBASIC0.84□□□□□ -2.27
VCX3AQ9NNX9 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC0.84□□□□□ -2.27
VCX3AQ9NNX9 AC005178.1-201ENST00000508392 440 ntBASIC0.84□□□□□ -2.27
VCX3AQ9NNX9 MTCO3P23-201ENST00000561363 289 ntBASIC0.84□□□□□ -2.27
VCX3AQ9NNX9 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.84□□□□□ -2.27
VCX3AQ9NNX9 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.84□□□□□ -2.27
VCX3AQ9NNX9 AL391646.1-201ENST00000603860 190 ntBASIC0.84□□□□□ -2.27
VCX3AQ9NNX9 AC016727.2-201ENST00000603988 621 ntBASIC0.84□□□□□ -2.27
VCX3AQ9NNX9 MIR98-201ENST00000606724 119 ntBASIC0.84□□□□□ -2.27
VCX3AQ9NNX9 AC016597.2-201ENST00000613256 341 ntBASIC0.84□□□□□ -2.27
VCX3AQ9NNX9 DLEU1_1.1-201ENST00000618107 190 ntBASIC0.84□□□□□ -2.27
VCX3AQ9NNX9 MIR6852-201ENST00000621699 66 ntBASIC0.84□□□□□ -2.27
VCX3AQ9NNX9 AL603839.4-201ENST00000624658 1005 ntBASIC0.84□□□□□ -2.27
VCX3AQ9NNX9 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.84□□□□□ -2.28
VCX3AQ9NNX9 RNU6-417P-201ENST00000384712 107 ntBASIC0.83□□□□□ -2.28
VCX3AQ9NNX9 AC010154.1-201ENST00000425857 269 ntBASIC0.83□□□□□ -2.28
VCX3AQ9NNX9 RPL39P5-202ENST00000512505 151 ntBASIC0.83□□□□□ -2.28
VCX3AQ9NNX9 ACA64.5-201ENST00000516207 127 ntBASIC0.83□□□□□ -2.28
VCX3AQ9NNX9 RNU6-948P-201ENST00000516374 107 ntBASIC0.83□□□□□ -2.28
VCX3AQ9NNX9 SNORA70.22-201ENST00000517160 124 ntBASIC0.83□□□□□ -2.28
VCX3AQ9NNX9 AC005562.2-201ENST00000618264 111 ntBASIC0.83□□□□□ -2.28
VCX3AQ9NNX9 MPP6-209ENST00000625307 126 ntTSL 5 BASIC0.83□□□□□ -2.28
VCX3AQ9NNX9 RNU6-1097P-201ENST00000363586 107 ntBASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 Y_RNA.287-201ENST00000364853 94 ntBASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 RNU4-48P-201ENST00000365559 182 ntBASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 RNU6-975P-201ENST00000384296 105 ntBASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 RNU6-1235P-201ENST00000384559 107 ntBASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 MIR515-2-201ENST00000384883 83 ntBASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 MIR515-1-201ENST00000384884 83 ntBASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 RNA5SP467-201ENST00000391274 118 ntBASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 RPS27P1-201ENST00000450552 247 ntBASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 RNU6-498P-201ENST00000459468 107 ntBASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 RPL39P38-201ENST00000467018 153 ntBASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 AC087343.1-201ENST00000477341 475 ntBASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 AC103851.1-201ENST00000506833 274 ntBASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 AC119751.5-201ENST00000514077 770 ntBASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 SCARNA16.2-201ENST00000516520 172 ntBASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 RNU6-1069P-201ENST00000516612 133 ntBASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 RNU6-323P-201ENST00000521915 107 ntBASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 MIR3682-201ENST00000581338 84 ntBASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 AC092354.1-201ENST00000606057 376 ntBASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 AC006566.1-201ENST00000608943 513 ntBASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 AC006001.4-201ENST00000622243 395 ntBASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC0.82□□□□□ -2.28
VCX3AQ9NNX9 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC0.81□□□□□ -2.28
VCX3AQ9NNX9 RPL17P50-201ENST00000396131 546 ntBASIC0.81□□□□□ -2.28
VCX3AQ9NNX9 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC0.81□□□□□ -2.28
VCX3AQ9NNX9 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC0.81□□□□□ -2.28
VCX3AQ9NNX9 Z99497.1-201ENST00000421282 135 ntBASIC0.81□□□□□ -2.28
VCX3AQ9NNX9 AC013410.2-201ENST00000422627 201 ntBASIC0.81□□□□□ -2.28
VCX3AQ9NNX9 TIMM9P3-201ENST00000428659 274 ntBASIC0.81□□□□□ -2.28
VCX3AQ9NNX9 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.81□□□□□ -2.28
VCX3AQ9NNX9 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 122.1 ms