Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 7SK.11-201ENST00000615477 250 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 AC009159.2-201ENST00000617603 606 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 MIR6835-201ENST00000621552 64 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 7SK.13-201ENST00000622040 250 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 AC006927.3-201ENST00000638789 384 ntBASIC0.96□□□□□ -2.26
USP42Q9H9J4 RNU6-105P-201ENST00000363909 104 ntBASIC0.95□□□□□ -2.26
USP42Q9H9J4 RNU6-1019P-201ENST00000364424 107 ntBASIC0.95□□□□□ -2.26
USP42Q9H9J4 RNU6-169P-201ENST00000365336 107 ntBASIC0.95□□□□□ -2.26
USP42Q9H9J4 RNU6-1026P-201ENST00000384465 108 ntBASIC0.95□□□□□ -2.26
USP42Q9H9J4 RNU6-925P-201ENST00000384629 104 ntBASIC0.95□□□□□ -2.26
USP42Q9H9J4 ARL5AP1-201ENST00000418991 388 ntBASIC0.95□□□□□ -2.26
USP42Q9H9J4 AC010975.2-201ENST00000427781 588 ntBASIC0.95□□□□□ -2.26
USP42Q9H9J4 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC0.95□□□□□ -2.26
USP42Q9H9J4 AC104850.1-201ENST00000435940 476 ntBASIC0.95□□□□□ -2.26
USP42Q9H9J4 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC0.95□□□□□ -2.26
USP42Q9H9J4 GAPDHP17-201ENST00000449858 1001 ntBASIC0.95□□□□□ -2.26
USP42Q9H9J4 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC0.95□□□□□ -2.26
USP42Q9H9J4 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC0.95□□□□□ -2.26
USP42Q9H9J4 RNU6-1041P-201ENST00000516254 102 ntBASIC0.95□□□□□ -2.26
USP42Q9H9J4 RNA5SP404-201ENST00000517118 132 ntBASIC0.95□□□□□ -2.26
USP42Q9H9J4 CENPUP1-201ENST00000526649 1202 ntBASIC0.95□□□□□ -2.26
USP42Q9H9J4 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.95□□□□□ -2.26
USP42Q9H9J4 AC015688.6-201ENST00000577737 104 ntBASIC0.95□□□□□ -2.26
USP42Q9H9J4 AC012507.3-201ENST00000603556 477 ntBASIC0.95□□□□□ -2.26
USP42Q9H9J4 MZT1P2-201ENST00000604387 248 ntBASIC0.95□□□□□ -2.26
USP42Q9H9J4 Z69720.2-201ENST00000624755 279 ntBASIC0.95□□□□□ -2.26
USP42Q9H9J4 SNORD115-7-201ENST00000365306 82 ntBASIC0.94□□□□□ -2.26
USP42Q9H9J4 RNU5E-5P-201ENST00000365379 116 ntBASIC0.94□□□□□ -2.26
USP42Q9H9J4 RNU6-116P-201ENST00000384042 109 ntBASIC0.94□□□□□ -2.26
USP42Q9H9J4 COX6CP10-201ENST00000416832 224 ntBASIC0.94□□□□□ -2.26
USP42Q9H9J4 MTCO3P29-201ENST00000432119 779 ntBASIC0.94□□□□□ -2.26
USP42Q9H9J4 MTCYBP39-201ENST00000437562 491 ntBASIC0.94□□□□□ -2.26
USP42Q9H9J4 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC0.94□□□□□ -2.26
USP42Q9H9J4 MTND1P30-201ENST00000441241 901 ntBASIC0.94□□□□□ -2.26
USP42Q9H9J4 ZNF114P1-201ENST00000453500 292 ntBASIC0.94□□□□□ -2.26
USP42Q9H9J4 MTCYBP1-201ENST00000454315 1119 ntBASIC0.94□□□□□ -2.26
USP42Q9H9J4 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC0.94□□□□□ -2.26
USP42Q9H9J4 HMGN2P9-201ENST00000476875 229 ntBASIC0.94□□□□□ -2.26
USP42Q9H9J4 AL163973.1-201ENST00000484753 577 ntBASIC0.94□□□□□ -2.26
USP42Q9H9J4 AC074344.1-201ENST00000512823 224 ntBASIC0.94□□□□□ -2.26
USP42Q9H9J4 Y_RNA.672-201ENST00000516289 104 ntBASIC0.94□□□□□ -2.26
USP42Q9H9J4 AC022878.1-201ENST00000530684 149 ntBASIC0.94□□□□□ -2.26
USP42Q9H9J4 ELOCP32-201ENST00000548625 324 ntBASIC0.94□□□□□ -2.26
USP42Q9H9J4 AL512310.8-201ENST00000550183 120 ntBASIC0.94□□□□□ -2.26
USP42Q9H9J4 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.94□□□□□ -2.26
USP42Q9H9J4 MIR3923-201ENST00000579521 83 ntBASIC0.94□□□□□ -2.26
USP42Q9H9J4 AC005771.1-201ENST00000585581 349 ntBASIC0.94□□□□□ -2.26
USP42Q9H9J4 HSPE1P19-201ENST00000603327 295 ntBASIC0.94□□□□□ -2.26
USP42Q9H9J4 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.94□□□□□ -2.26
USP42Q9H9J4 RNU6-179P-201ENST00000363350 107 ntBASIC0.93□□□□□ -2.26
USP42Q9H9J4 RNU6-1303P-201ENST00000364841 107 ntBASIC0.93□□□□□ -2.26
USP42Q9H9J4 RNU6-43P-201ENST00000384302 107 ntBASIC0.93□□□□□ -2.26
USP42Q9H9J4 RNU6-692P-201ENST00000384496 107 ntBASIC0.93□□□□□ -2.26
USP42Q9H9J4 RNA5SP193-201ENST00000410353 107 ntBASIC0.93□□□□□ -2.26
USP42Q9H9J4 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.93□□□□□ -2.26
USP42Q9H9J4 HSFY7P-201ENST00000432672 318 ntBASIC0.93□□□□□ -2.26
USP42Q9H9J4 HSFY8P-201ENST00000437934 318 ntBASIC0.93□□□□□ -2.26
USP42Q9H9J4 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC0.93□□□□□ -2.26
USP42Q9H9J4 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC0.93□□□□□ -2.26
USP42Q9H9J4 AC073910.1-201ENST00000445047 438 ntBASIC0.93□□□□□ -2.26
USP42Q9H9J4 HSFY5P-201ENST00000453726 309 ntBASIC0.93□□□□□ -2.26
USP42Q9H9J4 snoU13.27-201ENST00000459278 104 ntBASIC0.93□□□□□ -2.26
USP42Q9H9J4 AC116562.3-201ENST00000506136 177 ntBASIC0.93□□□□□ -2.26
USP42Q9H9J4 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC0.93□□□□□ -2.26
USP42Q9H9J4 RNU6-1098P-201ENST00000516772 96 ntBASIC0.93□□□□□ -2.26
USP42Q9H9J4 RNU2-46P-201ENST00000517038 113 ntBASIC0.93□□□□□ -2.26
USP42Q9H9J4 AC090572.1-201ENST00000519251 160 ntBASIC0.93□□□□□ -2.26
USP42Q9H9J4 AC068587.5-201ENST00000528506 175 ntBASIC0.93□□□□□ -2.26
USP42Q9H9J4 AC008752.3-201ENST00000588113 712 ntBASIC0.93□□□□□ -2.26
USP42Q9H9J4 AP000240.1-201ENST00000609910 452 ntBASIC0.93□□□□□ -2.26
USP42Q9H9J4 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.93□□□□□ -2.26
USP42Q9H9J4 MTND4P14-201ENST00000435799 1354 ntBASIC0.93□□□□□ -2.26
USP42Q9H9J4 Y_RNA.132-201ENST00000363421 102 ntBASIC0.92□□□□□ -2.26
USP42Q9H9J4 RNU6-1214P-201ENST00000363650 109 ntBASIC0.92□□□□□ -2.26
USP42Q9H9J4 RNA5SP259-201ENST00000365541 109 ntBASIC0.92□□□□□ -2.26
USP42Q9H9J4 SNORA20.2-201ENST00000383922 131 ntBASIC0.92□□□□□ -2.26
USP42Q9H9J4 RNU6-45P-201ENST00000384471 107 ntBASIC0.92□□□□□ -2.26
USP42Q9H9J4 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC0.92□□□□□ -2.26
USP42Q9H9J4 GTF2IP13-201ENST00000438487 386 ntBASIC0.92□□□□□ -2.26
USP42Q9H9J4 DYNLT3P2-201ENST00000442517 295 ntBASIC0.92□□□□□ -2.26
USP42Q9H9J4 USP9YP12-201ENST00000450481 570 ntBASIC0.92□□□□□ -2.26
USP42Q9H9J4 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC0.92□□□□□ -2.26
USP42Q9H9J4 AC114982.1-201ENST00000469402 321 ntBASIC0.92□□□□□ -2.26
USP42Q9H9J4 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC0.92□□□□□ -2.26
USP42Q9H9J4 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC0.92□□□□□ -2.26
USP42Q9H9J4 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC0.92□□□□□ -2.26
USP42Q9H9J4 RNA5SP503-201ENST00000517047 117 ntBASIC0.92□□□□□ -2.26
USP42Q9H9J4 IL7-206ENST00000520269 456 ntTSL 3 BASIC0.92□□□□□ -2.26
USP42Q9H9J4 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC0.92□□□□□ -2.26
USP42Q9H9J4 MIR7844-201ENST00000616161 122 ntBASIC0.92□□□□□ -2.26
USP42Q9H9J4 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC0.92□□□□□ -2.26
USP42Q9H9J4 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
USP42Q9H9J4 SNORD114-23-201ENST00000363536 72 ntBASIC0.91□□□□□ -2.26
USP42Q9H9J4 U3.9-201ENST00000363823 204 ntBASIC0.91□□□□□ -2.26
USP42Q9H9J4 RNY1P12-201ENST00000364251 105 ntBASIC0.91□□□□□ -2.26
USP42Q9H9J4 RNU6-877P-201ENST00000383868 107 ntBASIC0.91□□□□□ -2.26
USP42Q9H9J4 SNORA70.7-201ENST00000384159 133 ntBASIC0.91□□□□□ -2.26
USP42Q9H9J4 RNU6-1235P-201ENST00000384559 107 ntBASIC0.91□□□□□ -2.26
USP42Q9H9J4 AC011233.1-201ENST00000422812 283 ntBASIC0.91□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms