Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC4.02□□□□□ -1.77
ZKSCAN3Q9BRR0 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
ZKSCAN3Q9BRR0 Y_RNA.7-201ENST00000362352 102 ntBASIC4.02□□□□□ -1.77
ZKSCAN3Q9BRR0 RNU6-727P-201ENST00000363592 107 ntBASIC4.02□□□□□ -1.77
ZKSCAN3Q9BRR0 SNORD116-18-201ENST00000383961 92 ntBASIC4.02□□□□□ -1.77
ZKSCAN3Q9BRR0 PTGES3P4-201ENST00000426243 356 ntBASIC4.02□□□□□ -1.77
ZKSCAN3Q9BRR0 RNA5SP309-201ENST00000516670 106 ntBASIC4.02□□□□□ -1.77
ZKSCAN3Q9BRR0 SNORD19.2-201ENST00000516978 73 ntBASIC4.02□□□□□ -1.77
ZKSCAN3Q9BRR0 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC4.02□□□□□ -1.77
ZKSCAN3Q9BRR0 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC4.02□□□□□ -1.77
ZKSCAN3Q9BRR0 AC009127.3-201ENST00000570531 403 ntBASIC4.02□□□□□ -1.77
ZKSCAN3Q9BRR0 MIR7975-201ENST00000619350 68 ntBASIC4.02□□□□□ -1.77
ZKSCAN3Q9BRR0 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
ZKSCAN3Q9BRR0 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
ZKSCAN3Q9BRR0 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
ZKSCAN3Q9BRR0 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
ZKSCAN3Q9BRR0 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.01□□□□□ -1.77
ZKSCAN3Q9BRR0 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.01□□□□□ -1.77
ZKSCAN3Q9BRR0 AL513302.2-201ENST00000562313 1842 ntBASIC4.01□□□□□ -1.77
ZKSCAN3Q9BRR0 MIR208A-201ENST00000362287 71 ntBASIC4.01□□□□□ -1.77
ZKSCAN3Q9BRR0 RNU6-312P-201ENST00000364629 107 ntBASIC4.01□□□□□ -1.77
ZKSCAN3Q9BRR0 RNU6-1117P-201ENST00000384525 104 ntBASIC4.01□□□□□ -1.77
ZKSCAN3Q9BRR0 RNU6-748P-201ENST00000384648 107 ntBASIC4.01□□□□□ -1.77
ZKSCAN3Q9BRR0 RNVU1-14-201ENST00000384770 164 ntBASIC4.01□□□□□ -1.77
ZKSCAN3Q9BRR0 CBX3P9-201ENST00000402326 552 ntBASIC4.01□□□□□ -1.77
ZKSCAN3Q9BRR0 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC4.01□□□□□ -1.77
ZKSCAN3Q9BRR0 AL357552.1-201ENST00000445254 415 ntBASIC4.01□□□□□ -1.77
ZKSCAN3Q9BRR0 AC103975.1-201ENST00000482506 483 ntBASIC4.01□□□□□ -1.77
ZKSCAN3Q9BRR0 RNU5F-2P-201ENST00000516066 82 ntBASIC4.01□□□□□ -1.77
ZKSCAN3Q9BRR0 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.01□□□□□ -1.77
ZKSCAN3Q9BRR0 AP002001.1-203ENST00000534002 267 ntBASIC4.01□□□□□ -1.77
ZKSCAN3Q9BRR0 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC4.01□□□□□ -1.77
ZKSCAN3Q9BRR0 AL034555.1-201ENST00000604816 211 ntBASIC4.01□□□□□ -1.77
ZKSCAN3Q9BRR0 RNU6-91P-201ENST00000607774 107 ntBASIC4.01□□□□□ -1.77
ZKSCAN3Q9BRR0 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
ZKSCAN3Q9BRR0 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
ZKSCAN3Q9BRR0 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
ZKSCAN3Q9BRR0 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
ZKSCAN3Q9BRR0 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC4□□□□□ -1.77
ZKSCAN3Q9BRR0 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC4□□□□□ -1.77
ZKSCAN3Q9BRR0 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
ZKSCAN3Q9BRR0 Y_RNA.121-201ENST00000363309 113 ntBASIC4□□□□□ -1.77
ZKSCAN3Q9BRR0 Y_RNA.343-201ENST00000365354 112 ntBASIC4□□□□□ -1.77
ZKSCAN3Q9BRR0 RNU4-17P-201ENST00000365598 141 ntBASIC4□□□□□ -1.77
ZKSCAN3Q9BRR0 RNU6-1264P-201ENST00000383891 107 ntBASIC4□□□□□ -1.77
ZKSCAN3Q9BRR0 RNU6-19P-201ENST00000384718 107 ntBASIC4□□□□□ -1.77
ZKSCAN3Q9BRR0 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4□□□□□ -1.77
ZKSCAN3Q9BRR0 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC4□□□□□ -1.77
ZKSCAN3Q9BRR0 AC096649.2-201ENST00000416186 393 ntBASIC4□□□□□ -1.77
ZKSCAN3Q9BRR0 AC017083.1-201ENST00000428093 483 ntBASIC4□□□□□ -1.77
ZKSCAN3Q9BRR0 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC4□□□□□ -1.77
ZKSCAN3Q9BRR0 AC093663.1-201ENST00000497190 394 ntBASIC4□□□□□ -1.77
ZKSCAN3Q9BRR0 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC4□□□□□ -1.77
ZKSCAN3Q9BRR0 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC4□□□□□ -1.77
ZKSCAN3Q9BRR0 SUMO2P18-201ENST00000518873 252 ntBASIC4□□□□□ -1.77
ZKSCAN3Q9BRR0 AC084757.4-201ENST00000616350 526 ntBASIC4□□□□□ -1.77
ZKSCAN3Q9BRR0 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4□□□□□ -1.77
ZKSCAN3Q9BRR0 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
ZKSCAN3Q9BRR0 RNU1-33P-201ENST00000364249 162 ntBASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 Y_RNA.238-201ENST00000364441 102 ntBASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 RNU6-1130P-201ENST00000365434 107 ntBASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 RNU6-449P-201ENST00000383914 107 ntBASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 AL591034.1-201ENST00000407447 340 ntBASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 HMGN2P16-201ENST00000456802 261 ntBASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 AL441985.1-201ENST00000457727 251 ntBASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 snoU13.28-201ENST00000459235 104 ntBASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 AL049830.2-201ENST00000480072 201 ntBASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 AC005840.1-201ENST00000498412 377 ntBASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 RNU2-12P-201ENST00000517216 168 ntBASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 AC074050.1-201ENST00000563247 211 ntBASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 AC091152.3-201ENST00000604227 325 ntBASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 HSPE1P7-201ENST00000604681 321 ntBASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 MIR6076-201ENST00000617521 113 ntBASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.99□□□□□ -1.77
ZKSCAN3Q9BRR0 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
ZKSCAN3Q9BRR0 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
ZKSCAN3Q9BRR0 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
ZKSCAN3Q9BRR0 Y_RNA.23-201ENST00000362496 106 ntBASIC3.98□□□□□ -1.77
ZKSCAN3Q9BRR0 Y_RNA.329-201ENST00000365209 107 ntBASIC3.98□□□□□ -1.77
ZKSCAN3Q9BRR0 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
ZKSCAN3Q9BRR0 RNU6ATAC19P-201ENST00000408096 110 ntBASIC3.98□□□□□ -1.77
ZKSCAN3Q9BRR0 AC245291.1-201ENST00000419501 328 ntBASIC3.98□□□□□ -1.77
ZKSCAN3Q9BRR0 RPS27AP9-201ENST00000477681 438 ntBASIC3.98□□□□□ -1.77
ZKSCAN3Q9BRR0 RPL32P34-201ENST00000486380 400 ntBASIC3.98□□□□□ -1.77
ZKSCAN3Q9BRR0 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC3.98□□□□□ -1.77
ZKSCAN3Q9BRR0 FCF1P8-201ENST00000510322 597 ntBASIC3.98□□□□□ -1.77
ZKSCAN3Q9BRR0 SNORA70.19-201ENST00000516717 90 ntBASIC3.98□□□□□ -1.77
ZKSCAN3Q9BRR0 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.98□□□□□ -1.77
ZKSCAN3Q9BRR0 AC027176.1-201ENST00000560204 514 ntBASIC3.98□□□□□ -1.77
ZKSCAN3Q9BRR0 RPS15AP11-201ENST00000594193 385 ntBASIC3.98□□□□□ -1.77
ZKSCAN3Q9BRR0 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms