Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 GPM6BP3-201ENST00000442797 145 ntBASIC2.2□□□□□ -2.06
USP28Q96RU2 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.2□□□□□ -2.06
USP28Q96RU2 AC012308.1-201ENST00000451232 178 ntBASIC2.2□□□□□ -2.06
USP28Q96RU2 AC006026.2-201ENST00000457376 180 ntBASIC2.2□□□□□ -2.06
USP28Q96RU2 SNORD19B-201ENST00000459623 84 ntBASIC2.2□□□□□ -2.06
USP28Q96RU2 AC109446.1-201ENST00000566172 220 ntBASIC2.2□□□□□ -2.06
USP28Q96RU2 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.2□□□□□ -2.06
USP28Q96RU2 AC078899.2-201ENST00000595282 212 ntBASIC2.2□□□□□ -2.06
USP28Q96RU2 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.2□□□□□ -2.06
USP28Q96RU2 AL133255.1-201ENST00000606374 441 ntBASIC2.2□□□□□ -2.06
USP28Q96RU2 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.2□□□□□ -2.06
USP28Q96RU2 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.2□□□□□ -2.06
USP28Q96RU2 AL590808.1-201ENST00000618696 141 ntBASIC2.2□□□□□ -2.06
USP28Q96RU2 AC098657.3-201ENST00000620434 263 ntBASIC2.2□□□□□ -2.06
USP28Q96RU2 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
USP28Q96RU2 MIR3529-201ENST00000637713 78 ntBASIC2.2□□□□□ -2.06
USP28Q96RU2 AL109809.4-201ENST00000603520 2185 ntBASIC2.2□□□□□ -2.06
USP28Q96RU2 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
USP28Q96RU2 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.19□□□□□ -2.06
USP28Q96RU2 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.19□□□□□ -2.06
USP28Q96RU2 RNU6-529P-201ENST00000363383 104 ntBASIC2.19□□□□□ -2.06
USP28Q96RU2 RNU6-694P-201ENST00000364071 147 ntBASIC2.19□□□□□ -2.06
USP28Q96RU2 Y_RNA.813-201ENST00000364639 102 ntBASIC2.19□□□□□ -2.06
USP28Q96RU2 RNU6-43P-201ENST00000384302 107 ntBASIC2.19□□□□□ -2.06
USP28Q96RU2 RNU6-1297P-201ENST00000384415 104 ntBASIC2.19□□□□□ -2.06
USP28Q96RU2 RNU6-933P-201ENST00000384424 107 ntBASIC2.19□□□□□ -2.06
USP28Q96RU2 RNU6-310P-201ENST00000384655 107 ntBASIC2.19□□□□□ -2.06
USP28Q96RU2 RNU6-1106P-201ENST00000390845 107 ntBASIC2.19□□□□□ -2.06
USP28Q96RU2 RNY4P36-201ENST00000391116 96 ntBASIC2.19□□□□□ -2.06
USP28Q96RU2 SNORA75.4-201ENST00000391278 119 ntBASIC2.19□□□□□ -2.06
USP28Q96RU2 RNA5SP425-201ENST00000410336 112 ntBASIC2.19□□□□□ -2.06
USP28Q96RU2 RNU2-63P-201ENST00000410792 194 ntBASIC2.19□□□□□ -2.06
USP28Q96RU2 RNA5SP489-201ENST00000410986 109 ntBASIC2.19□□□□□ -2.06
USP28Q96RU2 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.19□□□□□ -2.06
USP28Q96RU2 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.19□□□□□ -2.06
USP28Q96RU2 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.19□□□□□ -2.06
USP28Q96RU2 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.19□□□□□ -2.06
USP28Q96RU2 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.19□□□□□ -2.06
USP28Q96RU2 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.19□□□□□ -2.06
USP28Q96RU2 AL441985.1-201ENST00000457727 251 ntBASIC2.19□□□□□ -2.06
USP28Q96RU2 RPL36AP48-201ENST00000485521 314 ntBASIC2.19□□□□□ -2.06
USP28Q96RU2 RPS27P21-201ENST00000486977 252 ntBASIC2.19□□□□□ -2.06
USP28Q96RU2 RPL22P13-201ENST00000493291 347 ntBASIC2.19□□□□□ -2.06
USP28Q96RU2 RNU5B-3P-201ENST00000516601 115 ntBASIC2.19□□□□□ -2.06
USP28Q96RU2 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.19□□□□□ -2.06
USP28Q96RU2 AC007229.1-201ENST00000590455 412 ntBASIC2.19□□□□□ -2.06
USP28Q96RU2 AC064859.1-201ENST00000624741 174 ntBASIC2.19□□□□□ -2.06
USP28Q96RU2 SNORA43.4-201ENST00000629559 138 ntBASIC2.19□□□□□ -2.06
USP28Q96RU2 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.19□□□□□ -2.06
USP28Q96RU2 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
USP28Q96RU2 AL359851.1-201ENST00000569460 4997 ntBASIC2.19□□□□□ -2.06
USP28Q96RU2 RNU6-227P-201ENST00000362865 103 ntBASIC2.18□□□□□ -2.06
USP28Q96RU2 SNORD50.1-201ENST00000362987 71 ntBASIC2.18□□□□□ -2.06
USP28Q96RU2 Y_RNA.123-201ENST00000363338 102 ntBASIC2.18□□□□□ -2.06
USP28Q96RU2 U3.13-201ENST00000364804 214 ntBASIC2.18□□□□□ -2.06
USP28Q96RU2 Y_RNA.384-201ENST00000383909 102 ntBASIC2.18□□□□□ -2.06
USP28Q96RU2 SNORA36A-201ENST00000384221 132 ntBASIC2.18□□□□□ -2.06
USP28Q96RU2 RNU1-148P-201ENST00000384472 162 ntBASIC2.18□□□□□ -2.06
USP28Q96RU2 RNU2-40P-201ENST00000410833 196 ntBASIC2.18□□□□□ -2.06
USP28Q96RU2 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.18□□□□□ -2.06
USP28Q96RU2 AC138623.1-201ENST00000418060 216 ntBASIC2.18□□□□□ -2.06
USP28Q96RU2 U8.21-201ENST00000459536 136 ntBASIC2.18□□□□□ -2.06
USP28Q96RU2 SMURF2P1-201ENST00000514992 481 ntBASIC2.18□□□□□ -2.06
USP28Q96RU2 RNA5SP364-201ENST00000516938 78 ntBASIC2.18□□□□□ -2.06
USP28Q96RU2 MRPS36P4-201ENST00000534436 298 ntBASIC2.18□□□□□ -2.06
USP28Q96RU2 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC2.18□□□□□ -2.06
USP28Q96RU2 VN1R107P-201ENST00000601784 209 ntBASIC2.18□□□□□ -2.06
USP28Q96RU2 AL158827.2-201ENST00000602494 330 ntBASIC2.18□□□□□ -2.06
USP28Q96RU2 MIR8076-201ENST00000611401 83 ntBASIC2.18□□□□□ -2.06
USP28Q96RU2 AC024581.2-201ENST00000619986 252 ntBASIC2.18□□□□□ -2.06
USP28Q96RU2 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.18□□□□□ -2.06
USP28Q96RU2 AL691447.3-201ENST00000635020 330 ntBASIC2.18□□□□□ -2.06
USP28Q96RU2 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
USP28Q96RU2 Z75746.1-201ENST00000440243 2080 ntBASIC2.18□□□□□ -2.06
USP28Q96RU2 HAUS6P2-201ENST00000433254 2404 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
USP28Q96RU2 Y_RNA.2-201ENST00000362330 96 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 RNU6-593P-201ENST00000364716 112 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 RNU6-487P-201ENST00000365430 104 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 Y_RNA.533-201ENST00000384596 114 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 Y_RNA.579-201ENST00000390939 94 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 MTCYBP4-201ENST00000401524 249 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 RNU6-174P-201ENST00000410406 106 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 AP000275.1-201ENST00000411943 390 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 EIF1AXP1-201ENST00000419267 435 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 DPH3P2-201ENST00000422618 250 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.17□□□□□ -2.06
USP28Q96RU2 DAP3P1-201ENST00000441522 278 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 RPL39P29-201ENST00000447779 157 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 AL353705.4-201ENST00000449661 238 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 AC079354.2-201ENST00000453523 154 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 RPL30P15-201ENST00000457129 321 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC2.17□□□□□ -2.06
USP28Q96RU2 AC005741.1-201ENST00000511094 432 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 SCARNA16.2-201ENST00000516520 172 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 RNU6-1153P-201ENST00000516760 105 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 Y_RNA.708-201ENST00000516950 96 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 CBX3P8-201ENST00000532412 525 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 CBX3P7-201ENST00000532876 502 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms