Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 AC005786.1-201ENST00000588553 154 ntBASIC1.8□□□□□ -2.12
ZNF560Q96MR9 AL357078.3-201ENST00000607528 618 ntBASIC1.8□□□□□ -2.12
ZNF560Q96MR9 AC092807.2-201ENST00000609367 243 ntBASIC1.8□□□□□ -2.12
ZNF560Q96MR9 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC1.8□□□□□ -2.12
ZNF560Q96MR9 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.8□□□□□ -2.12
ZNF560Q96MR9 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
ZNF560Q96MR9 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
ZNF560Q96MR9 AC121333.1-201ENST00000567488 2709 ntBASIC1.79□□□□□ -2.12
ZNF560Q96MR9 RNU1-17P-201ENST00000363022 152 ntBASIC1.79□□□□□ -2.12
ZNF560Q96MR9 SNORD31B-201ENST00000364977 69 ntBASIC1.79□□□□□ -2.12
ZNF560Q96MR9 RNU6-438P-201ENST00000365561 103 ntBASIC1.79□□□□□ -2.12
ZNF560Q96MR9 SNORA32.2-201ENST00000384049 122 ntBASIC1.79□□□□□ -2.12
ZNF560Q96MR9 MIR514A2-201ENST00000385131 88 ntBASIC1.79□□□□□ -2.12
ZNF560Q96MR9 MIR514A3-201ENST00000385132 88 ntBASIC1.79□□□□□ -2.12
ZNF560Q96MR9 EIF4E2P1-201ENST00000393781 255 ntBASIC1.79□□□□□ -2.12
ZNF560Q96MR9 MIR208B-201ENST00000401172 77 ntBASIC1.79□□□□□ -2.12
ZNF560Q96MR9 RNU2-16P-201ENST00000410712 136 ntBASIC1.79□□□□□ -2.12
ZNF560Q96MR9 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.79□□□□□ -2.12
ZNF560Q96MR9 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.79□□□□□ -2.12
ZNF560Q96MR9 AL359672.1-201ENST00000442302 409 ntBASIC1.79□□□□□ -2.12
ZNF560Q96MR9 SNORD13-201ENST00000459299 104 ntBASIC1.79□□□□□ -2.12
ZNF560Q96MR9 U8.21-201ENST00000459536 136 ntBASIC1.79□□□□□ -2.12
ZNF560Q96MR9 RPL9P9-202ENST00000466501 579 ntBASIC1.79□□□□□ -2.12
ZNF560Q96MR9 AC114801.2-201ENST00000503825 781 ntBASIC1.79□□□□□ -2.12
ZNF560Q96MR9 RPL39P5-202ENST00000512505 151 ntBASIC1.79□□□□□ -2.12
ZNF560Q96MR9 RNU6-237P-201ENST00000515985 71 ntBASIC1.79□□□□□ -2.12
ZNF560Q96MR9 SNORA19.2-201ENST00000516013 114 ntBASIC1.79□□□□□ -2.12
ZNF560Q96MR9 RNU6-1098P-201ENST00000516772 96 ntBASIC1.79□□□□□ -2.12
ZNF560Q96MR9 GNAI2P1-201ENST00000541815 315 ntBASIC1.79□□□□□ -2.12
ZNF560Q96MR9 AC025423.5-201ENST00000550230 219 ntBASIC1.79□□□□□ -2.12
ZNF560Q96MR9 SCOCP1-201ENST00000554676 349 ntBASIC1.79□□□□□ -2.12
ZNF560Q96MR9 AC103810.8-201ENST00000607347 118 ntBASIC1.79□□□□□ -2.12
ZNF560Q96MR9 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
ZNF560Q96MR9 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
ZNF560Q96MR9 RNU1-76P-201ENST00000362903 159 ntBASIC1.78□□□□□ -2.12
ZNF560Q96MR9 Y_RNA.167-201ENST00000363735 109 ntBASIC1.78□□□□□ -2.12
ZNF560Q96MR9 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.78□□□□□ -2.12
ZNF560Q96MR9 CALM2P3-201ENST00000400429 449 ntBASIC1.78□□□□□ -2.12
ZNF560Q96MR9 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC1.78□□□□□ -2.12
ZNF560Q96MR9 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.78□□□□□ -2.12
ZNF560Q96MR9 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.78□□□□□ -2.12
ZNF560Q96MR9 RNU7-14P-201ENST00000459331 62 ntBASIC1.78□□□□□ -2.12
ZNF560Q96MR9 TOMM22P6-201ENST00000465035 409 ntBASIC1.78□□□□□ -2.12
ZNF560Q96MR9 RNVU1-2-201ENST00000516326 135 ntBASIC1.78□□□□□ -2.12
ZNF560Q96MR9 RNU5F-4P-201ENST00000516581 114 ntBASIC1.78□□□□□ -2.12
ZNF560Q96MR9 SNORD60.2-201ENST00000516883 86 ntBASIC1.78□□□□□ -2.12
ZNF560Q96MR9 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.78□□□□□ -2.12
ZNF560Q96MR9 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC1.78□□□□□ -2.12
ZNF560Q96MR9 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
ZNF560Q96MR9 AC024909.2-201ENST00000553035 286 ntBASIC1.78□□□□□ -2.12
ZNF560Q96MR9 AL157687.1-201ENST00000554853 619 ntBASIC1.78□□□□□ -2.12
ZNF560Q96MR9 HSBP1P1-201ENST00000555205 166 ntBASIC1.78□□□□□ -2.12
ZNF560Q96MR9 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.78□□□□□ -2.12
ZNF560Q96MR9 AC100830.2-201ENST00000581636 240 ntBASIC1.78□□□□□ -2.12
ZNF560Q96MR9 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.78□□□□□ -2.12
ZNF560Q96MR9 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.78□□□□□ -2.12
ZNF560Q96MR9 AL121757.2-201ENST00000611223 313 ntBASIC1.78□□□□□ -2.12
ZNF560Q96MR9 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.78□□□□□ -2.12
ZNF560Q96MR9 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.77□□□□□ -2.13
ZNF560Q96MR9 MIR340-201ENST00000362125 95 ntBASIC1.77□□□□□ -2.13
ZNF560Q96MR9 RNA5SP100-201ENST00000410903 110 ntBASIC1.77□□□□□ -2.13
ZNF560Q96MR9 RNA5SP59-201ENST00000410922 110 ntBASIC1.77□□□□□ -2.13
ZNF560Q96MR9 SNRPEP8-201ENST00000442866 260 ntBASIC1.77□□□□□ -2.13
ZNF560Q96MR9 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.77□□□□□ -2.13
ZNF560Q96MR9 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.77□□□□□ -2.13
ZNF560Q96MR9 RPS23P5-201ENST00000495419 428 ntBASIC1.77□□□□□ -2.13
ZNF560Q96MR9 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC1.77□□□□□ -2.13
ZNF560Q96MR9 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.77□□□□□ -2.13
ZNF560Q96MR9 CBX3P4-201ENST00000538909 354 ntBASIC1.77□□□□□ -2.13
ZNF560Q96MR9 AL512360.1-201ENST00000555346 234 ntBASIC1.77□□□□□ -2.13
ZNF560Q96MR9 NDUFAF4P1-201ENST00000559425 519 ntBASIC1.77□□□□□ -2.13
ZNF560Q96MR9 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.77□□□□□ -2.13
ZNF560Q96MR9 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.77□□□□□ -2.13
ZNF560Q96MR9 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.77□□□□□ -2.13
ZNF560Q96MR9 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
ZNF560Q96MR9 RNA5SP99-201ENST00000364020 114 ntBASIC1.76□□□□□ -2.13
ZNF560Q96MR9 SNORD48-201ENST00000364953 64 ntBASIC1.76□□□□□ -2.13
ZNF560Q96MR9 RNU6-214P-201ENST00000384130 107 ntBASIC1.76□□□□□ -2.13
ZNF560Q96MR9 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.76□□□□□ -2.13
ZNF560Q96MR9 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.76□□□□□ -2.13
ZNF560Q96MR9 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.76□□□□□ -2.13
ZNF560Q96MR9 AC016925.1-201ENST00000458303 298 ntBASIC1.76□□□□□ -2.13
ZNF560Q96MR9 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.76□□□□□ -2.13
ZNF560Q96MR9 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.76□□□□□ -2.13
ZNF560Q96MR9 AC104576.1-201ENST00000524225 88 ntBASIC1.76□□□□□ -2.13
ZNF560Q96MR9 SUB1P4-201ENST00000566062 339 ntBASIC1.76□□□□□ -2.13
ZNF560Q96MR9 AC090517.1-201ENST00000569307 266 ntBASIC1.76□□□□□ -2.13
ZNF560Q96MR9 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.76□□□□□ -2.13
ZNF560Q96MR9 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.76□□□□□ -2.13
ZNF560Q96MR9 MTND5P9-201ENST00000503854 1755 ntBASIC1.75□□□□□ -2.13
ZNF560Q96MR9 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
ZNF560Q96MR9 Y_RNA.231-201ENST00000364358 102 ntBASIC1.75□□□□□ -2.13
ZNF560Q96MR9 RNU6-1317P-201ENST00000364582 104 ntBASIC1.75□□□□□ -2.13
ZNF560Q96MR9 SNORA67.5-201ENST00000391036 107 ntBASIC1.75□□□□□ -2.13
ZNF560Q96MR9 SNORA12.2-201ENST00000391040 156 ntBASIC1.75□□□□□ -2.13
ZNF560Q96MR9 RNU6-1093P-201ENST00000391194 107 ntBASIC1.75□□□□□ -2.13
ZNF560Q96MR9 RN7SKP101-201ENST00000411376 320 ntBASIC1.75□□□□□ -2.13
ZNF560Q96MR9 AC139712.2-201ENST00000424302 339 ntBASIC1.75□□□□□ -2.13
ZNF560Q96MR9 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.75□□□□□ -2.13
ZNF560Q96MR9 PPP1R2P5-201ENST00000457256 603 ntBASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 143.3 ms