Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 MDM2-232ENST00000544561 213 ntTSL 5 BASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 MIR5195-201ENST00000583555 115 ntBASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 MIR4506-201ENST00000584693 77 ntBASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 Y_RNA.170-201ENST00000363746 110 ntBASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 RNU6-47P-201ENST00000383866 107 ntBASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 RNU6-318P-201ENST00000384283 103 ntBASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 U3.19-201ENST00000390893 196 ntBASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 RNA5SP213-201ENST00000391031 106 ntBASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 SNORD78.2-201ENST00000391076 69 ntBASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 RN7SKP123-201ENST00000410732 291 ntBASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 AC097463.2-201ENST00000421074 142 ntBASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 MICF-203ENST00000432679 129 ntBASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 AC008155.2-201ENST00000464337 397 ntBASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 TOMM22P6-201ENST00000465035 409 ntBASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 FCF1P8-201ENST00000510322 597 ntBASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 SNORA31.26-201ENST00000517250 137 ntBASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 MRPS36P4-201ENST00000534436 298 ntBASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 AL590240.4-201ENST00000616908 390 ntBASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 AC091953.5-201ENST00000622919 233 ntBASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 AC021753.1-201ENST00000635724 168 ntBASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 AC138915.1-201ENST00000565427 1685 ntBASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.29□□□□□ -1.88
CLIP3Q96DZ5 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 MIR148B-201ENST00000362252 99 ntBASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 RNU6-222P-201ENST00000362438 107 ntBASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 Y_RNA.44-201ENST00000362676 108 ntBASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 RNU4-90P-201ENST00000362773 141 ntBASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 RNU6-486P-201ENST00000363116 107 ntBASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 RNU6-525P-201ENST00000363685 104 ntBASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 RNU6-1141P-201ENST00000364520 107 ntBASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 Y_RNA.504-201ENST00000384481 104 ntBASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 TMSB4XP3-201ENST00000445144 114 ntBASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 AL031659.1-201ENST00000447075 539 ntBASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 COX6CP14-201ENST00000469580 174 ntBASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 RN7SL594P-201ENST00000470590 287 ntBASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 SEPT14P8-201ENST00000508026 178 ntBASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 AC022559.1-201ENST00000520905 205 ntBASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 AL713866.2-201ENST00000603579 219 ntBASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 MIR7157-201ENST00000635801 60 ntBASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
CLIP3Q96DZ5 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 Y_RNA.122-201ENST00000363331 96 ntBASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 RNA5SP42-201ENST00000364278 115 ntBASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 SNORD32A-201ENST00000364805 84 ntBASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 Y_RNA.286-201ENST00000364813 102 ntBASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 U8.9-201ENST00000365667 134 ntBASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 SNORA9-201ENST00000384215 133 ntBASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 RNU6-17P-201ENST00000384245 107 ntBASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 RNU6-18P-201ENST00000384527 107 ntBASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 RNA5SP120-201ENST00000410900 112 ntBASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 RNU6-1328P-201ENST00000410938 106 ntBASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 RNU6-651P-201ENST00000411040 105 ntBASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 AL513477.1-202ENST00000417061 214 ntBASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 CYCSP48-201ENST00000417124 323 ntBASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 RPL23AP95-201ENST00000426806 265 ntBASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 snoU13.30-201ENST00000458951 104 ntBASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 SNORD116-28-201ENST00000516123 91 ntBASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 IGKV2-26-201ENST00000518305 343 ntBASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 AC103810.1-201ENST00000579873 453 ntBASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 Z83818.1-201ENST00000603584 150 ntBASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
CLIP3Q96DZ5 AC009541.1-201ENST00000438279 2662 ntBASIC3.26□□□□□ -1.89
CLIP3Q96DZ5 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CLIP3Q96DZ5 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.26□□□□□ -1.89
CLIP3Q96DZ5 SNORA38.1-201ENST00000364172 131 ntBASIC3.26□□□□□ -1.89
CLIP3Q96DZ5 RNU6-740P-201ENST00000364734 105 ntBASIC3.26□□□□□ -1.89
CLIP3Q96DZ5 RNU4-9P-201ENST00000364951 139 ntBASIC3.26□□□□□ -1.89
CLIP3Q96DZ5 RNY1P5-201ENST00000383890 115 ntBASIC3.26□□□□□ -1.89
CLIP3Q96DZ5 RNU1-57P-201ENST00000384491 166 ntBASIC3.26□□□□□ -1.89
CLIP3Q96DZ5 SNORA26.7-201ENST00000391288 122 ntBASIC3.26□□□□□ -1.89
CLIP3Q96DZ5 AC126124.2-201ENST00000413542 321 ntBASIC3.26□□□□□ -1.89
CLIP3Q96DZ5 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 167.3 ms