Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.24□□□□□ -1.73
NPAS3Q8IXF0 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
NPAS3Q8IXF0 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
NPAS3Q8IXF0 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 AC103988.1-201ENST00000566382 2177 ntBASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 RNY4P6-201ENST00000363667 96 ntBASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 RNA5SP387-201ENST00000364226 106 ntBASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 RNU1-100P-201ENST00000365255 165 ntBASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 Y_RNA.361-201ENST00000365515 120 ntBASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 MIR624-201ENST00000385217 97 ntBASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 RNA5SP504-201ENST00000410676 117 ntBASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 RPL27AP8-201ENST00000424277 446 ntBASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 TOMM22P2-201ENST00000430735 237 ntBASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 RNA5SP153-201ENST00000516498 76 ntBASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 CR383656.8-201ENST00000549046 145 ntBASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 MIR3944-201ENST00000581277 108 ntBASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 MIR7154-201ENST00000620673 73 ntBASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.23□□□□□ -1.73
NPAS3Q8IXF0 NOL8P1-201ENST00000508336 3529 ntBASIC4.22□□□□□ -1.73
NPAS3Q8IXF0 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
NPAS3Q8IXF0 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
NPAS3Q8IXF0 RNU1-108P-201ENST00000362556 161 ntBASIC4.22□□□□□ -1.73
NPAS3Q8IXF0 SNORD46.1-201ENST00000364139 104 ntBASIC4.22□□□□□ -1.73
NPAS3Q8IXF0 SNORA73.2-201ENST00000364946 201 ntBASIC4.22□□□□□ -1.73
NPAS3Q8IXF0 AC027124.2-201ENST00000428249 105 ntBASIC4.22□□□□□ -1.73
NPAS3Q8IXF0 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC4.22□□□□□ -1.73
NPAS3Q8IXF0 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC4.22□□□□□ -1.73
NPAS3Q8IXF0 AC011406.1-201ENST00000512440 370 ntBASIC4.22□□□□□ -1.73
NPAS3Q8IXF0 RNU1-103P-201ENST00000516502 125 ntBASIC4.22□□□□□ -1.73
NPAS3Q8IXF0 RNU6-1337P-201ENST00000516525 95 ntBASIC4.22□□□□□ -1.73
NPAS3Q8IXF0 RNU6-1018P-201ENST00000516577 106 ntBASIC4.22□□□□□ -1.73
NPAS3Q8IXF0 IGLV3-26-201ENST00000520756 302 ntBASIC4.22□□□□□ -1.73
NPAS3Q8IXF0 AC084364.2-201ENST00000546924 395 ntBASIC4.22□□□□□ -1.73
NPAS3Q8IXF0 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC4.22□□□□□ -1.73
NPAS3Q8IXF0 MTND6P33-201ENST00000571794 183 ntBASIC4.22□□□□□ -1.73
NPAS3Q8IXF0 AC105245.1-201ENST00000581934 244 ntBASIC4.22□□□□□ -1.73
NPAS3Q8IXF0 SNORA51-201ENST00000606420 132 ntBASIC4.22□□□□□ -1.73
NPAS3Q8IXF0 AL021707.8-201ENST00000609428 183 ntBASIC4.22□□□□□ -1.73
NPAS3Q8IXF0 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
NPAS3Q8IXF0 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.22□□□□□ -1.73
NPAS3Q8IXF0 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
NPAS3Q8IXF0 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC4.21□□□□□ -1.73
NPAS3Q8IXF0 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.73
NPAS3Q8IXF0 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
NPAS3Q8IXF0 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 SNORA11.1-201ENST00000408133 129 ntBASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 CRYBB2P1-203ENST00000415709 538 ntBASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 YME1L1P1-201ENST00000429435 297 ntBASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 AC125238.1-201ENST00000448842 249 ntBASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 AC012308.1-201ENST00000451232 178 ntBASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 RNA5SP57-201ENST00000459463 123 ntBASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 RPL29P14-201ENST00000495837 428 ntBASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 RNU6-830P-201ENST00000516353 107 ntBASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 MIR5588-201ENST00000581890 63 ntBASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 AC136601.2-201ENST00000604356 474 ntBASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 5S_rRNA.13-201ENST00000622298 123 ntBASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 SNORD98-201ENST00000636377 67 ntBASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
NPAS3Q8IXF0 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.2□□□□□ -1.74
NPAS3Q8IXF0 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
NPAS3Q8IXF0 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
NPAS3Q8IXF0 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
NPAS3Q8IXF0 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
NPAS3Q8IXF0 SNORA63.1-201ENST00000362493 131 ntBASIC4.2□□□□□ -1.74
NPAS3Q8IXF0 RNU6-487P-201ENST00000365430 104 ntBASIC4.2□□□□□ -1.74
NPAS3Q8IXF0 RNU6-979P-201ENST00000383896 107 ntBASIC4.2□□□□□ -1.74
NPAS3Q8IXF0 AL117342.1-201ENST00000404861 406 ntBASIC4.2□□□□□ -1.74
NPAS3Q8IXF0 RN7SKP156-201ENST00000410308 342 ntBASIC4.2□□□□□ -1.74
NPAS3Q8IXF0 SNORA57.3-201ENST00000411095 141 ntBASIC4.2□□□□□ -1.74
NPAS3Q8IXF0 EIF4EP4-201ENST00000424916 578 ntBASIC4.2□□□□□ -1.74
NPAS3Q8IXF0 AL365496.1-201ENST00000426885 215 ntBASIC4.2□□□□□ -1.74
NPAS3Q8IXF0 PPBPP1-201ENST00000510807 373 ntBASIC4.2□□□□□ -1.74
NPAS3Q8IXF0 RNU7-61P-201ENST00000515897 61 ntBASIC4.2□□□□□ -1.74
NPAS3Q8IXF0 RNA5SP236-201ENST00000516169 116 ntBASIC4.2□□□□□ -1.74
NPAS3Q8IXF0 RNU6-703P-201ENST00000516946 107 ntBASIC4.2□□□□□ -1.74
NPAS3Q8IXF0 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.2□□□□□ -1.74
NPAS3Q8IXF0 AC025627.2-201ENST00000576220 160 ntBASIC4.2□□□□□ -1.74
NPAS3Q8IXF0 MIR4666B-201ENST00000578142 81 ntBASIC4.2□□□□□ -1.74
NPAS3Q8IXF0 MIR3129-201ENST00000581095 76 ntBASIC4.2□□□□□ -1.74
NPAS3Q8IXF0 MIR5006-201ENST00000583027 110 ntBASIC4.2□□□□□ -1.74
NPAS3Q8IXF0 AC069200.1-201ENST00000609511 323 ntBASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms