Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.23□□□□□ -2.37
USP54Q70EL1 SNORD99-201ENST00000408612 74 ntBASIC0.23□□□□□ -2.37
USP54Q70EL1 HMGN1P12-201ENST00000499125 195 ntBASIC0.23□□□□□ -2.37
USP54Q70EL1 RNA5SP134-201ENST00000516492 96 ntBASIC0.23□□□□□ -2.37
USP54Q70EL1 RNU6-1098P-201ENST00000516772 96 ntBASIC0.23□□□□□ -2.37
USP54Q70EL1 AC090888.2-201ENST00000559765 1144 ntBASIC0.23□□□□□ -2.37
USP54Q70EL1 AC091489.2-201ENST00000566263 604 ntBASIC0.23□□□□□ -2.37
USP54Q70EL1 MIR3146-201ENST00000580367 79 ntBASIC0.23□□□□□ -2.37
USP54Q70EL1 AL031281.1-201ENST00000604049 488 ntBASIC0.23□□□□□ -2.37
USP54Q70EL1 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.23□□□□□ -2.37
USP54Q70EL1 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC0.23□□□□□ -2.37
USP54Q70EL1 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC0.22□□□□□ -2.37
USP54Q70EL1 UBE2D3P3-201ENST00000426992 425 ntBASIC0.22□□□□□ -2.37
USP54Q70EL1 MTCYBP39-201ENST00000437562 491 ntBASIC0.22□□□□□ -2.37
USP54Q70EL1 AL008629.1-201ENST00000438615 184 ntBASIC0.22□□□□□ -2.37
USP54Q70EL1 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0.22□□□□□ -2.37
USP54Q70EL1 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.22□□□□□ -2.37
USP54Q70EL1 AC079395.1-201ENST00000510981 262 ntBASIC0.22□□□□□ -2.37
USP54Q70EL1 AC011406.1-201ENST00000512440 370 ntBASIC0.22□□□□□ -2.37
USP54Q70EL1 RNU6-1028P-201ENST00000517164 93 ntBASIC0.22□□□□□ -2.37
USP54Q70EL1 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.22□□□□□ -2.37
USP54Q70EL1 MTATP6P25-201ENST00000574491 261 ntBASIC0.22□□□□□ -2.37
USP54Q70EL1 MIR4802-201ENST00000581881 80 ntBASIC0.22□□□□□ -2.37
USP54Q70EL1 MIR6516-201ENST00000630554 81 ntBASIC0.22□□□□□ -2.37
USP54Q70EL1 AC106858.1-201ENST00000637497 429 ntBASIC0.22□□□□□ -2.37
USP54Q70EL1 AC073343.1-201ENST00000328239 651 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 AC090625.1-201ENST00000357130 210 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 SNORD18A-201ENST00000363753 72 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 RNU6-105P-201ENST00000363909 104 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 RNA5SP201-201ENST00000410316 124 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC0.21□□□□□ -2.38
USP54Q70EL1 USP9YP21-201ENST00000420603 432 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 AC078809.1-201ENST00000427601 140 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC0.21□□□□□ -2.38
USP54Q70EL1 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC0.21□□□□□ -2.38
USP54Q70EL1 MIR5692A1-201ENST00000580523 69 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 AC099785.1-201ENST00000605697 437 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 PCGEM1.1-201ENST00000613431 131 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 AC093913.1-201ENST00000614178 329 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 AC026585.1-201ENST00000619582 524 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 SNORD98-201ENST00000636377 67 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 CASC19-280ENST00000642102 1351 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 RNU6-1141P-201ENST00000364520 107 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 Y_RNA.363-201ENST00000365529 113 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 AF228730.1-201ENST00000397972 663 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 MTCYBP2-201ENST00000407745 171 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 AL022718.1-201ENST00000412004 84 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC0.21□□□□□ -2.38
USP54Q70EL1 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC0.21□□□□□ -2.38
USP54Q70EL1 MIR5697-201ENST00000578045 78 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 MIR5093-201ENST00000583199 100 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 AL606834.3-201ENST00000602615 496 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 AL356157.2-201ENST00000605122 111 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 AL353149.1-201ENST00000610667 244 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 SNORD3E-202ENST00000627253 216 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 AC103706.2-201ENST00000638080 240 ntBASIC0.21□□□□□ -2.38
USP54Q70EL1 RNU6-969P-201ENST00000383900 105 ntBASIC0.2□□□□□ -2.38
USP54Q70EL1 MIR653-201ENST00000385279 96 ntBASIC0.2□□□□□ -2.38
USP54Q70EL1 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC0.2□□□□□ -2.38
USP54Q70EL1 Z95118.1-201ENST00000421372 247 ntBASIC0.2□□□□□ -2.38
USP54Q70EL1 AC244670.1-201ENST00000436879 112 ntBASIC0.2□□□□□ -2.38
USP54Q70EL1 AC233266.1-201ENST00000454518 96 ntBASIC0.2□□□□□ -2.38
USP54Q70EL1 AC016925.1-201ENST00000458303 298 ntBASIC0.2□□□□□ -2.38
USP54Q70EL1 AC010531.2-201ENST00000465012 153 ntBASIC0.2□□□□□ -2.38
USP54Q70EL1 WDR78-207ENST00000488333 613 ntTSL 3 BASIC0.2□□□□□ -2.38
USP54Q70EL1 KRTAP13-6P-201ENST00000508999 371 ntBASIC0.2□□□□□ -2.38
USP54Q70EL1 MIR4667-201ENST00000578933 66 ntBASIC0.2□□□□□ -2.38
USP54Q70EL1 AL034555.1-201ENST00000604816 211 ntBASIC0.2□□□□□ -2.38
USP54Q70EL1 PRELID3BP2-201ENST00000605362 201 ntBASIC0.2□□□□□ -2.38
USP54Q70EL1 AP001596.2-201ENST00000608410 312 ntBASIC0.2□□□□□ -2.38
USP54Q70EL1 AC242852.1-201ENST00000612151 96 ntBASIC0.2□□□□□ -2.38
USP54Q70EL1 AC244015.1-201ENST00000622301 99 ntBASIC0.2□□□□□ -2.38
USP54Q70EL1 MTND4P14-201ENST00000435799 1354 ntBASIC0.19□□□□□ -2.38
USP54Q70EL1 RNU6-384P-201ENST00000364900 104 ntBASIC0.19□□□□□ -2.38
USP54Q70EL1 SNORA4.2-201ENST00000365313 147 ntBASIC0.19□□□□□ -2.38
USP54Q70EL1 RNU6-700P-201ENST00000391043 107 ntBASIC0.19□□□□□ -2.38
USP54Q70EL1 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.19□□□□□ -2.38
USP54Q70EL1 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC0.19□□□□□ -2.38
USP54Q70EL1 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC0.19□□□□□ -2.38
USP54Q70EL1 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC0.19□□□□□ -2.38
USP54Q70EL1 AL356583.2-201ENST00000426536 280 ntBASIC0.19□□□□□ -2.38
USP54Q70EL1 AL031313.1-201ENST00000448435 256 ntBASIC0.19□□□□□ -2.38
USP54Q70EL1 RPL39P39-201ENST00000455840 151 ntBASIC0.19□□□□□ -2.38
USP54Q70EL1 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.19□□□□□ -2.38
USP54Q70EL1 AC002350.1-201ENST00000490759 375 ntBASIC0.19□□□□□ -2.38
USP54Q70EL1 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC0.19□□□□□ -2.38
USP54Q70EL1 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.19□□□□□ -2.38
USP54Q70EL1 AC023050.2-201ENST00000544968 387 ntBASIC0.19□□□□□ -2.38
USP54Q70EL1 TPRKBP2-201ENST00000565969 475 ntBASIC0.19□□□□□ -2.38
USP54Q70EL1 TMF1P1-201ENST00000576058 373 ntBASIC0.19□□□□□ -2.38
USP54Q70EL1 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC0.19□□□□□ -2.38
USP54Q70EL1 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC0.19□□□□□ -2.38
USP54Q70EL1 AC087588.2-201ENST00000617667 426 ntBASIC0.19□□□□□ -2.38
USP54Q70EL1 uc_338.22-201ENST00000622722 187 ntBASIC0.19□□□□□ -2.38
USP54Q70EL1 AL356596.1-201ENST00000624230 379 ntBASIC0.19□□□□□ -2.38
USP54Q70EL1 RNU4-48P-201ENST00000365559 182 ntBASIC0.18□□□□□ -2.38
USP54Q70EL1 RNU6-378P-201ENST00000384324 107 ntBASIC0.18□□□□□ -2.38
USP54Q70EL1 RNU6-348P-201ENST00000384386 107 ntBASIC0.18□□□□□ -2.38
USP54Q70EL1 RNU1-119P-201ENST00000391122 165 ntBASIC0.18□□□□□ -2.38
USP54Q70EL1 AC010154.1-201ENST00000425857 269 ntBASIC0.18□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms