Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 U3.9-201ENST00000363823 204 ntBASIC3.38□□□□□ -1.87
USP53Q70EK8 SNORA18.3-201ENST00000384122 132 ntBASIC3.38□□□□□ -1.87
USP53Q70EK8 RNU6-21P-201ENST00000384710 107 ntBASIC3.38□□□□□ -1.87
USP53Q70EK8 AL512633.1-201ENST00000399931 655 ntBASIC3.38□□□□□ -1.87
USP53Q70EK8 Z98742.2-201ENST00000431564 187 ntBASIC3.38□□□□□ -1.87
USP53Q70EK8 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.38□□□□□ -1.87
USP53Q70EK8 UQCRBP2-201ENST00000447827 297 ntBASIC3.38□□□□□ -1.87
USP53Q70EK8 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.38□□□□□ -1.87
USP53Q70EK8 AC145146.1-201ENST00000496370 254 ntBASIC3.38□□□□□ -1.87
USP53Q70EK8 AC093663.1-201ENST00000497190 394 ntBASIC3.38□□□□□ -1.87
USP53Q70EK8 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.38□□□□□ -1.87
USP53Q70EK8 RNU7-110P-201ENST00000516891 62 ntBASIC3.38□□□□□ -1.87
USP53Q70EK8 SCARNA24.2-201ENST00000516968 130 ntBASIC3.38□□□□□ -1.87
USP53Q70EK8 IGKV2-26-201ENST00000518305 343 ntBASIC3.38□□□□□ -1.87
USP53Q70EK8 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.38□□□□□ -1.87
USP53Q70EK8 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
USP53Q70EK8 AC091564.4-201ENST00000533934 2194 ntBASIC3.38□□□□□ -1.87
USP53Q70EK8 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3.37□□□□□ -1.87
USP53Q70EK8 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
USP53Q70EK8 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
USP53Q70EK8 RNU6-1266P-201ENST00000362794 105 ntBASIC3.37□□□□□ -1.87
USP53Q70EK8 RNU6-1175P-201ENST00000365200 107 ntBASIC3.37□□□□□ -1.87
USP53Q70EK8 SNORA46.1-201ENST00000391069 153 ntBASIC3.37□□□□□ -1.87
USP53Q70EK8 SNORA53-201ENST00000391141 249 ntBASIC3.37□□□□□ -1.87
USP53Q70EK8 AL033519.2-201ENST00000403958 392 ntBASIC3.37□□□□□ -1.87
USP53Q70EK8 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC3.37□□□□□ -1.87
USP53Q70EK8 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.37□□□□□ -1.87
USP53Q70EK8 IFNA11P-201ENST00000446352 526 ntBASIC3.37□□□□□ -1.87
USP53Q70EK8 AC018448.1-201ENST00000552843 316 ntBASIC3.37□□□□□ -1.87
USP53Q70EK8 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC3.37□□□□□ -1.87
USP53Q70EK8 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.37□□□□□ -1.87
USP53Q70EK8 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.37□□□□□ -1.87
USP53Q70EK8 AC005176.2-201ENST00000596933 147 ntBASIC3.37□□□□□ -1.87
USP53Q70EK8 YPEL5P2-201ENST00000605553 359 ntBASIC3.37□□□□□ -1.87
USP53Q70EK8 BX284668.6-201ENST00000606899 438 ntBASIC3.37□□□□□ -1.87
USP53Q70EK8 U2.14-201ENST00000615943 113 ntBASIC3.37□□□□□ -1.87
USP53Q70EK8 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC3.37□□□□□ -1.87
USP53Q70EK8 AC069528.2-201ENST00000624849 1991 ntBASIC3.37□□□□□ -1.87
USP53Q70EK8 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
USP53Q70EK8 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
USP53Q70EK8 AP003122.5-201ENST00000527668 3766 ntBASIC3.37□□□□□ -1.87
USP53Q70EK8 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.36□□□□□ -1.87
USP53Q70EK8 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
USP53Q70EK8 RNY1-201ENST00000364228 113 ntBASIC3.36□□□□□ -1.87
USP53Q70EK8 RNU6-326P-201ENST00000365480 107 ntBASIC3.36□□□□□ -1.87
USP53Q70EK8 RNU6-338P-201ENST00000383888 105 ntBASIC3.36□□□□□ -1.87
USP53Q70EK8 RNU6-1083P-201ENST00000384022 107 ntBASIC3.36□□□□□ -1.87
USP53Q70EK8 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
USP53Q70EK8 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.36□□□□□ -1.87
USP53Q70EK8 ELOCP21-201ENST00000412558 336 ntBASIC3.36□□□□□ -1.87
USP53Q70EK8 AC017079.2-201ENST00000416102 485 ntBASIC3.36□□□□□ -1.87
USP53Q70EK8 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC3.36□□□□□ -1.87
USP53Q70EK8 EIF4EP4-201ENST00000424916 578 ntBASIC3.36□□□□□ -1.87
USP53Q70EK8 RNU6-625P-201ENST00000459412 107 ntBASIC3.36□□□□□ -1.87
USP53Q70EK8 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.36□□□□□ -1.87
USP53Q70EK8 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.36□□□□□ -1.87
USP53Q70EK8 AC009779.6-201ENST00000603972 165 ntBASIC3.36□□□□□ -1.87
USP53Q70EK8 AC005562.2-201ENST00000618264 111 ntBASIC3.36□□□□□ -1.87
USP53Q70EK8 UCA1.1-201ENST00000620952 75 ntBASIC3.36□□□□□ -1.87
USP53Q70EK8 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.36□□□□□ -1.87
USP53Q70EK8 AC002064.3-201ENST00000623448 346 ntBASIC3.36□□□□□ -1.87
USP53Q70EK8 AC018692.3-201ENST00000623929 123 ntBASIC3.36□□□□□ -1.87
USP53Q70EK8 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC3.36□□□□□ -1.87
USP53Q70EK8 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
USP53Q70EK8 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
USP53Q70EK8 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
USP53Q70EK8 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.35□□□□□ -1.87
USP53Q70EK8 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
USP53Q70EK8 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
USP53Q70EK8 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
USP53Q70EK8 Y_RNA.54-201ENST00000362766 105 ntBASIC3.35□□□□□ -1.87
USP53Q70EK8 RNA5SP139-201ENST00000364340 117 ntBASIC3.35□□□□□ -1.87
USP53Q70EK8 RNU2-64P-201ENST00000411315 191 ntBASIC3.35□□□□□ -1.87
USP53Q70EK8 RAB28P5-201ENST00000427490 651 ntBASIC3.35□□□□□ -1.87
USP53Q70EK8 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC3.35□□□□□ -1.87
USP53Q70EK8 AC006028.1-201ENST00000438379 402 ntBASIC3.35□□□□□ -1.87
USP53Q70EK8 AL139109.1-201ENST00000455491 297 ntBASIC3.35□□□□□ -1.87
USP53Q70EK8 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC3.35□□□□□ -1.87
USP53Q70EK8 UBE2DNL-203ENST00000474922 222 ntBASIC3.35□□□□□ -1.87
USP53Q70EK8 MRPS36P2-201ENST00000512569 299 ntBASIC3.35□□□□□ -1.87
USP53Q70EK8 SCARNA17.1-201ENST00000516211 143 ntBASIC3.35□□□□□ -1.87
USP53Q70EK8 SCARNA17.2-201ENST00000516334 143 ntBASIC3.35□□□□□ -1.87
USP53Q70EK8 RNU2-31P-201ENST00000516954 155 ntBASIC3.35□□□□□ -1.87
USP53Q70EK8 TGIF1P1-201ENST00000558095 802 ntBASIC3.35□□□□□ -1.87
USP53Q70EK8 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.35□□□□□ -1.87
USP53Q70EK8 AC027176.1-201ENST00000560204 514 ntBASIC3.35□□□□□ -1.87
USP53Q70EK8 MIR4738-201ENST00000579134 87 ntBASIC3.35□□□□□ -1.87
USP53Q70EK8 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC3.35□□□□□ -1.87
USP53Q70EK8 MIR4765-201ENST00000585007 77 ntBASIC3.35□□□□□ -1.87
USP53Q70EK8 RMST_8.1-201ENST00000610287 165 ntBASIC3.35□□□□□ -1.87
USP53Q70EK8 SCARNA17.4-201ENST00000614296 143 ntBASIC3.35□□□□□ -1.87
USP53Q70EK8 TCL6_2.1-201ENST00000615162 119 ntBASIC3.35□□□□□ -1.87
USP53Q70EK8 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.35□□□□□ -1.87
USP53Q70EK8 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.35□□□□□ -1.87
USP53Q70EK8 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.87
USP53Q70EK8 AL021368.2-201ENST00000606125 5352 ntBASIC3.34□□□□□ -1.87
USP53Q70EK8 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.34□□□□□ -1.87
USP53Q70EK8 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
USP53Q70EK8 AC068647.1-201ENST00000489539 2265 ntBASIC3.34□□□□□ -1.87
USP53Q70EK8 snoU2_19.1-201ENST00000362361 80 ntBASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 169.9 ms