Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 MTND5P26-201ENST00000426018 1752 ntBASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 RNU6-227P-201ENST00000362865 103 ntBASIC1.71□□□□□ -2.14
CCDC40Q4G0X9 RNU6-1322P-201ENST00000364309 107 ntBASIC1.71□□□□□ -2.14
CCDC40Q4G0X9 SNORD116-1-201ENST00000384335 95 ntBASIC1.71□□□□□ -2.14
CCDC40Q4G0X9 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.71□□□□□ -2.14
CCDC40Q4G0X9 NCOR1P3-201ENST00000420479 303 ntBASIC1.71□□□□□ -2.14
CCDC40Q4G0X9 MTCO3P46-201ENST00000425787 232 ntBASIC1.71□□□□□ -2.14
CCDC40Q4G0X9 AL591806.2-201ENST00000433122 173 ntBASIC1.71□□□□□ -2.14
CCDC40Q4G0X9 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC1.71□□□□□ -2.14
CCDC40Q4G0X9 AC016925.1-201ENST00000458303 298 ntBASIC1.71□□□□□ -2.14
CCDC40Q4G0X9 AC023790.1-201ENST00000482174 347 ntBASIC1.71□□□□□ -2.14
CCDC40Q4G0X9 AC097473.1-201ENST00000508142 408 ntBASIC1.71□□□□□ -2.14
CCDC40Q4G0X9 AC025465.4-201ENST00000513422 638 ntBASIC1.71□□□□□ -2.14
CCDC40Q4G0X9 RNU6-405P-201ENST00000516637 110 ntBASIC1.71□□□□□ -2.14
CCDC40Q4G0X9 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.71□□□□□ -2.14
CCDC40Q4G0X9 MIR5692C1-201ENST00000585309 91 ntBASIC1.71□□□□□ -2.14
CCDC40Q4G0X9 BX248123.2-201ENST00000606318 124 ntBASIC1.71□□□□□ -2.14
CCDC40Q4G0X9 AL357078.3-201ENST00000607528 618 ntBASIC1.71□□□□□ -2.14
CCDC40Q4G0X9 AL121757.2-201ENST00000611223 313 ntBASIC1.71□□□□□ -2.14
CCDC40Q4G0X9 uc_338.5-201ENST00000611839 155 ntBASIC1.71□□□□□ -2.14
CCDC40Q4G0X9 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.71□□□□□ -2.14
CCDC40Q4G0X9 MIR6863-201ENST00000636112 90 ntBASIC1.71□□□□□ -2.14
CCDC40Q4G0X9 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 MTND5P9-201ENST00000503854 1755 ntBASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 MIR424-201ENST00000362227 98 ntBASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 RNU6-1329P-201ENST00000365664 107 ntBASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 RNU6-439P-201ENST00000384188 106 ntBASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 RNU6-1042P-201ENST00000384204 107 ntBASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 MIR764-201ENST00000390811 85 ntBASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 SNORA26.9-201ENST00000391322 122 ntBASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 CYCSP49-201ENST00000420810 319 ntBASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 MTND3P9-201ENST00000429526 346 ntBASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 snoU13.6-201ENST00000458785 104 ntBASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 RNU1-98P-201ENST00000458992 160 ntBASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 RNU6-970P-201ENST00000516312 107 ntBASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 SNORA31.17-201ENST00000516953 127 ntBASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 RNU6-835P-201ENST00000516974 104 ntBASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 MIR4255-201ENST00000579351 72 ntBASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 AC104984.5-201ENST00000586878 94 ntBASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 RPL17P51-201ENST00000605218 238 ntBASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.7□□□□□ -2.14
CCDC40Q4G0X9 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
CCDC40Q4G0X9 RNU6-1093P-201ENST00000391194 107 ntBASIC1.69□□□□□ -2.14
CCDC40Q4G0X9 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
CCDC40Q4G0X9 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC1.69□□□□□ -2.14
CCDC40Q4G0X9 TIMM9P3-201ENST00000428659 274 ntBASIC1.69□□□□□ -2.14
CCDC40Q4G0X9 MTCO1P44-201ENST00000441935 243 ntBASIC1.69□□□□□ -2.14
CCDC40Q4G0X9 AC007677.1-201ENST00000445757 515 ntBASIC1.69□□□□□ -2.14
CCDC40Q4G0X9 RPL9P9-202ENST00000466501 579 ntBASIC1.69□□□□□ -2.14
CCDC40Q4G0X9 RPS23P5-201ENST00000495419 428 ntBASIC1.69□□□□□ -2.14
CCDC40Q4G0X9 Y_RNA.654-201ENST00000497848 106 ntBASIC1.69□□□□□ -2.14
CCDC40Q4G0X9 SNORA19.2-201ENST00000516013 114 ntBASIC1.69□□□□□ -2.14
CCDC40Q4G0X9 RNU6-548P-201ENST00000517083 115 ntBASIC1.69□□□□□ -2.14
CCDC40Q4G0X9 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.69□□□□□ -2.14
CCDC40Q4G0X9 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.69□□□□□ -2.14
CCDC40Q4G0X9 MIR5094-201ENST00000578766 85 ntBASIC1.69□□□□□ -2.14
CCDC40Q4G0X9 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.69□□□□□ -2.14
CCDC40Q4G0X9 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.69□□□□□ -2.14
CCDC40Q4G0X9 AC092807.2-201ENST00000609367 243 ntBASIC1.69□□□□□ -2.14
CCDC40Q4G0X9 AL158209.2-201ENST00000619266 216 ntBASIC1.69□□□□□ -2.14
CCDC40Q4G0X9 AC245060.5-201ENST00000610778 3293 ntBASIC1.69□□□□□ -2.14
CCDC40Q4G0X9 AP000648.3-201ENST00000623539 4507 ntBASIC1.68□□□□□ -2.14
CCDC40Q4G0X9 RNU6-1317P-201ENST00000364582 104 ntBASIC1.68□□□□□ -2.14
CCDC40Q4G0X9 SNORA18.2-201ENST00000383865 132 ntBASIC1.68□□□□□ -2.14
CCDC40Q4G0X9 RNU6-259P-201ENST00000383999 107 ntBASIC1.68□□□□□ -2.14
CCDC40Q4G0X9 Y_RNA.481-201ENST00000384373 102 ntBASIC1.68□□□□□ -2.14
CCDC40Q4G0X9 MIR1304-201ENST00000408243 91 ntBASIC1.68□□□□□ -2.14
CCDC40Q4G0X9 RNU2-66P-201ENST00000410650 161 ntBASIC1.68□□□□□ -2.14
CCDC40Q4G0X9 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.68□□□□□ -2.14
CCDC40Q4G0X9 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.68□□□□□ -2.14
CCDC40Q4G0X9 RNU6-1208P-201ENST00000459588 107 ntBASIC1.68□□□□□ -2.14
CCDC40Q4G0X9 SRRM1P2-201ENST00000464531 1192 ntBASIC1.68□□□□□ -2.14
CCDC40Q4G0X9 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC1.68□□□□□ -2.14
CCDC40Q4G0X9 AC091885.1-201ENST00000506658 268 ntBASIC1.68□□□□□ -2.14
CCDC40Q4G0X9 DEFB131C-201ENST00000528817 165 ntBASIC1.68□□□□□ -2.14
CCDC40Q4G0X9 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.68□□□□□ -2.14
CCDC40Q4G0X9 AC016256.1-201ENST00000547971 354 ntBASIC1.68□□□□□ -2.14
CCDC40Q4G0X9 AC245008.1-201ENST00000608123 476 ntBASIC1.68□□□□□ -2.14
CCDC40Q4G0X9 Z99129.1-201ENST00000612510 255 ntBASIC1.68□□□□□ -2.14
CCDC40Q4G0X9 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.68□□□□□ -2.14
CCDC40Q4G0X9 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
CCDC40Q4G0X9 RNU6-661P-201ENST00000362409 107 ntBASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 Y_RNA.51-201ENST00000362725 102 ntBASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 RNU6-112P-201ENST00000363599 104 ntBASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 Y_RNA.167-201ENST00000363735 109 ntBASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 RNU6-338P-201ENST00000383888 105 ntBASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 RNU6-1026P-201ENST00000384465 108 ntBASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 RNU6-648P-201ENST00000410190 107 ntBASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 USP9YP14-201ENST00000430663 563 ntBASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 HMGB1P18-201ENST00000438801 619 ntBASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC1.67□□□□□ -2.14
CCDC40Q4G0X9 AL359672.1-201ENST00000442302 409 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms