Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
COL28A1Q2UY09 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
COL28A1Q2UY09 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
COL28A1Q2UY09 RNA5SP125-201ENST00000364843 120 ntBASIC2.44□□□□□ -2.02
COL28A1Q2UY09 RNU5E-4P-201ENST00000364931 120 ntBASIC2.44□□□□□ -2.02
COL28A1Q2UY09 Y_RNA.387-201ENST00000383918 102 ntBASIC2.44□□□□□ -2.02
COL28A1Q2UY09 Y_RNA.490-201ENST00000384413 102 ntBASIC2.44□□□□□ -2.02
COL28A1Q2UY09 RNU6-1274P-201ENST00000384557 107 ntBASIC2.44□□□□□ -2.02
COL28A1Q2UY09 RNA5SP181-201ENST00000410246 98 ntBASIC2.44□□□□□ -2.02
COL28A1Q2UY09 RNU4-14P-201ENST00000410858 122 ntBASIC2.44□□□□□ -2.02
COL28A1Q2UY09 AC012306.1-201ENST00000423267 114 ntBASIC2.44□□□□□ -2.02
COL28A1Q2UY09 MTND3P22-201ENST00000510932 243 ntBASIC2.44□□□□□ -2.02
COL28A1Q2UY09 AC005741.1-201ENST00000511094 432 ntBASIC2.44□□□□□ -2.02
COL28A1Q2UY09 Y_RNA.670-201ENST00000516255 105 ntBASIC2.44□□□□□ -2.02
COL28A1Q2UY09 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.44□□□□□ -2.02
COL28A1Q2UY09 MIR4635-201ENST00000583759 79 ntBASIC2.44□□□□□ -2.02
COL28A1Q2UY09 SCARNA4-201ENST00000629045 128 ntBASIC2.44□□□□□ -2.02
COL28A1Q2UY09 MIR1302-1-201ENST00000637932 143 ntBASIC2.44□□□□□ -2.02
COL28A1Q2UY09 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
COL28A1Q2UY09 KPNA2P1-201ENST00000458289 1591 ntBASIC2.44□□□□□ -2.02
COL28A1Q2UY09 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.44□□□□□ -2.02
COL28A1Q2UY09 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.43□□□□□ -2.02
COL28A1Q2UY09 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.43□□□□□ -2.02
COL28A1Q2UY09 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.43□□□□□ -2.02
COL28A1Q2UY09 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
COL28A1Q2UY09 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
COL28A1Q2UY09 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
COL28A1Q2UY09 AC233981.2-201ENST00000611524 1614 ntBASIC2.43□□□□□ -2.02
COL28A1Q2UY09 RNU6-1059P-201ENST00000363752 98 ntBASIC2.43□□□□□ -2.02
COL28A1Q2UY09 Y_RNA.529-201ENST00000384586 119 ntBASIC2.43□□□□□ -2.02
COL28A1Q2UY09 HMGB3P2-201ENST00000411913 584 ntBASIC2.43□□□□□ -2.02
COL28A1Q2UY09 AC243428.1-201ENST00000421099 264 ntBASIC2.43□□□□□ -2.02
COL28A1Q2UY09 Z82209.1-201ENST00000422141 2135 ntBASIC2.43□□□□□ -2.02
COL28A1Q2UY09 AL590556.1-201ENST00000423231 483 ntBASIC2.43□□□□□ -2.02
COL28A1Q2UY09 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.43□□□□□ -2.02
COL28A1Q2UY09 RNA5SP402-201ENST00000517148 110 ntBASIC2.43□□□□□ -2.02
COL28A1Q2UY09 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.43□□□□□ -2.02
COL28A1Q2UY09 MRPS36P4-201ENST00000534436 298 ntBASIC2.43□□□□□ -2.02
COL28A1Q2UY09 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.43□□□□□ -2.02
COL28A1Q2UY09 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.43□□□□□ -2.02
COL28A1Q2UY09 MIR4273-201ENST00000582824 84 ntBASIC2.43□□□□□ -2.02
COL28A1Q2UY09 Y_RNA.804-201ENST00000615262 101 ntBASIC2.43□□□□□ -2.02
COL28A1Q2UY09 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.43□□□□□ -2.02
COL28A1Q2UY09 AC137590.2-201ENST00000619709 240 ntBASIC2.43□□□□□ -2.02
COL28A1Q2UY09 U4.3-201ENST00000621047 82 ntBASIC2.43□□□□□ -2.02
COL28A1Q2UY09 FO624990.1-201ENST00000636373 85 ntBASIC2.43□□□□□ -2.02
COL28A1Q2UY09 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.43□□□□□ -2.02
COL28A1Q2UY09 ZNF299P-201ENST00000406845 1804 ntBASIC2.42□□□□□ -2.02
COL28A1Q2UY09 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
COL28A1Q2UY09 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.42□□□□□ -2.02
COL28A1Q2UY09 snoU2_19.1-201ENST00000362361 80 ntBASIC2.42□□□□□ -2.02
COL28A1Q2UY09 RNU6-1188P-201ENST00000363795 107 ntBASIC2.42□□□□□ -2.02
COL28A1Q2UY09 RNU4-9P-201ENST00000364951 139 ntBASIC2.42□□□□□ -2.02
COL28A1Q2UY09 RNU1-138P-201ENST00000384093 164 ntBASIC2.42□□□□□ -2.02
COL28A1Q2UY09 SNORA36A-201ENST00000384221 132 ntBASIC2.42□□□□□ -2.02
COL28A1Q2UY09 MTCYBP4-201ENST00000401524 249 ntBASIC2.42□□□□□ -2.02
COL28A1Q2UY09 AL358453.1-201ENST00000422522 250 ntBASIC2.42□□□□□ -2.02
COL28A1Q2UY09 USMG5P1-201ENST00000425964 177 ntBASIC2.42□□□□□ -2.02
COL28A1Q2UY09 CBX3P6-201ENST00000430257 527 ntBASIC2.42□□□□□ -2.02
COL28A1Q2UY09 AC096638.1-201ENST00000444678 216 ntBASIC2.42□□□□□ -2.02
COL28A1Q2UY09 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC2.42□□□□□ -2.02
COL28A1Q2UY09 RN7SKP210-201ENST00000459176 261 ntBASIC2.42□□□□□ -2.02
COL28A1Q2UY09 RPL23AP42-201ENST00000471152 471 ntBASIC2.42□□□□□ -2.02
COL28A1Q2UY09 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.42□□□□□ -2.02
COL28A1Q2UY09 AC021146.2-201ENST00000504736 556 ntBASIC2.42□□□□□ -2.02
COL28A1Q2UY09 MIR4498-201ENST00000577599 66 ntBASIC2.42□□□□□ -2.02
COL28A1Q2UY09 MIR5690-201ENST00000583739 73 ntBASIC2.42□□□□□ -2.02
COL28A1Q2UY09 AC005899.2-201ENST00000584353 90 ntBASIC2.42□□□□□ -2.02
COL28A1Q2UY09 AL117336.2-201ENST00000602435 335 ntBASIC2.42□□□□□ -2.02
COL28A1Q2UY09 AC009229.3-201ENST00000608056 282 ntBASIC2.42□□□□□ -2.02
COL28A1Q2UY09 PISRT1.1-201ENST00000616930 107 ntBASIC2.42□□□□□ -2.02
COL28A1Q2UY09 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.42□□□□□ -2.02
COL28A1Q2UY09 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.42□□□□□ -2.02
COL28A1Q2UY09 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.42□□□□□ -2.02
COL28A1Q2UY09 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
COL28A1Q2UY09 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
COL28A1Q2UY09 SNORD115-32-201ENST00000364079 82 ntBASIC2.41□□□□□ -2.02
COL28A1Q2UY09 SNORD32B-201ENST00000364460 84 ntBASIC2.41□□□□□ -2.02
COL28A1Q2UY09 Y_RNA.384-201ENST00000383909 102 ntBASIC2.41□□□□□ -2.02
COL28A1Q2UY09 RNU6-1297P-201ENST00000384415 104 ntBASIC2.41□□□□□ -2.02
COL28A1Q2UY09 RNU6-1072P-201ENST00000384703 107 ntBASIC2.41□□□□□ -2.02
COL28A1Q2UY09 RNU6-443P-201ENST00000384780 107 ntBASIC2.41□□□□□ -2.02
COL28A1Q2UY09 SNORA75.4-201ENST00000391278 119 ntBASIC2.41□□□□□ -2.02
COL28A1Q2UY09 RNU6-370P-201ENST00000411008 104 ntBASIC2.41□□□□□ -2.02
COL28A1Q2UY09 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.41□□□□□ -2.02
COL28A1Q2UY09 SNRPEP8-201ENST00000442866 260 ntBASIC2.41□□□□□ -2.02
COL28A1Q2UY09 AC090096.1-201ENST00000489168 390 ntBASIC2.41□□□□□ -2.02
COL28A1Q2UY09 RPL23AP75-201ENST00000491601 451 ntBASIC2.41□□□□□ -2.02
COL28A1Q2UY09 AC145146.1-201ENST00000496370 254 ntBASIC2.41□□□□□ -2.02
COL28A1Q2UY09 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.41□□□□□ -2.02
COL28A1Q2UY09 RNU6-559P-201ENST00000516151 98 ntBASIC2.41□□□□□ -2.02
COL28A1Q2UY09 SNORA31.11-201ENST00000516528 139 ntBASIC2.41□□□□□ -2.02
COL28A1Q2UY09 RNU6-307P-201ENST00000516743 106 ntBASIC2.41□□□□□ -2.02
COL28A1Q2UY09 RAB11AP2-201ENST00000545905 639 ntBASIC2.41□□□□□ -2.02
COL28A1Q2UY09 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.41□□□□□ -2.02
COL28A1Q2UY09 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.41□□□□□ -2.02
COL28A1Q2UY09 PCGEM1.1-201ENST00000613431 131 ntBASIC2.41□□□□□ -2.02
COL28A1Q2UY09 HMGB1P24-202ENST00000615653 685 ntBASIC2.41□□□□□ -2.02
COL28A1Q2UY09 AC090517.3-201ENST00000625170 141 ntBASIC2.41□□□□□ -2.02
COL28A1Q2UY09 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 128.7 ms