Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC078809.1-201ENST00000427601 140 ntBASIC2.58□□□□□ -2
CTCFP49711 AL445646.1-201ENST00000431784 216 ntBASIC2.58□□□□□ -2
CTCFP49711 AC244670.1-201ENST00000436879 112 ntBASIC2.58□□□□□ -2
CTCFP49711 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.58□□□□□ -2
CTCFP49711 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.58□□□□□ -2
CTCFP49711 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.58□□□□□ -2
CTCFP49711 IMMP1LP2-201ENST00000552954 492 ntBASIC2.58□□□□□ -2
CTCFP49711 AC009127.3-201ENST00000570531 403 ntBASIC2.58□□□□□ -2
CTCFP49711 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.58□□□□□ -2
CTCFP49711 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
CTCFP49711 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
CTCFP49711 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.57□□□□□ -2
CTCFP49711 RNU2-63P-201ENST00000410792 194 ntBASIC2.57□□□□□ -2
CTCFP49711 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.57□□□□□ -2
CTCFP49711 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.57□□□□□ -2
CTCFP49711 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.57□□□□□ -2
CTCFP49711 HMGB1P35-201ENST00000503360 598 ntBASIC2.57□□□□□ -2
CTCFP49711 AC114801.2-201ENST00000503825 781 ntBASIC2.57□□□□□ -2
CTCFP49711 RNA5SP182-201ENST00000516064 82 ntBASIC2.57□□□□□ -2
CTCFP49711 Y_RNA.682-201ENST00000516457 100 ntBASIC2.57□□□□□ -2
CTCFP49711 SNORA31.16-201ENST00000516773 139 ntBASIC2.57□□□□□ -2
CTCFP49711 RNU7-30P-201ENST00000516835 62 ntBASIC2.57□□□□□ -2
CTCFP49711 CBX3P7-201ENST00000532876 502 ntBASIC2.57□□□□□ -2
CTCFP49711 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC2.57□□□□□ -2
CTCFP49711 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.57□□□□□ -2
CTCFP49711 AC078795.3-201ENST00000602913 472 ntBASIC2.57□□□□□ -2
CTCFP49711 BX248123.2-201ENST00000606318 124 ntBASIC2.57□□□□□ -2
CTCFP49711 MIR3976-201ENST00000606807 139 ntBASIC2.57□□□□□ -2
CTCFP49711 MIR8076-201ENST00000611401 83 ntBASIC2.57□□□□□ -2
CTCFP49711 AL161423.1-201ENST00000613700 262 ntBASIC2.57□□□□□ -2
CTCFP49711 ZNF355P-201ENST00000427301 3216 ntBASIC2.57□□□□□ -2
CTCFP49711 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.57□□□□□ -2
CTCFP49711 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
CTCFP49711 AC009541.1-201ENST00000438279 2662 ntBASIC2.56□□□□□ -2
CTCFP49711 RNU6-661P-201ENST00000362409 107 ntBASIC2.56□□□□□ -2
CTCFP49711 Y_RNA.88-201ENST00000363029 99 ntBASIC2.56□□□□□ -2
CTCFP49711 Y_RNA.184-201ENST00000363884 108 ntBASIC2.56□□□□□ -2
CTCFP49711 RNY1-201ENST00000364228 113 ntBASIC2.56□□□□□ -2
CTCFP49711 U8.8-201ENST00000365399 135 ntBASIC2.56□□□□□ -2
CTCFP49711 Y_RNA.374-201ENST00000365606 101 ntBASIC2.56□□□□□ -2
CTCFP49711 MIR144-201ENST00000384886 86 ntBASIC2.56□□□□□ -2
CTCFP49711 MIR517A-201ENST00000385001 87 ntBASIC2.56□□□□□ -2
CTCFP49711 BTF3L4P2-201ENST00000392798 346 ntBASIC2.56□□□□□ -2
CTCFP49711 PCMTD1P1-201ENST00000455560 355 ntBASIC2.56□□□□□ -2
CTCFP49711 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.56□□□□□ -2
CTCFP49711 HMGN1P12-201ENST00000499125 195 ntBASIC2.56□□□□□ -2
CTCFP49711 MTND5P5-201ENST00000503764 376 ntBASIC2.56□□□□□ -2
CTCFP49711 AC022447.4-201ENST00000504053 364 ntBASIC2.56□□□□□ -2
CTCFP49711 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.56□□□□□ -2
CTCFP49711 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC2.56□□□□□ -2
CTCFP49711 MIR4790-201ENST00000577799 79 ntBASIC2.56□□□□□ -2
CTCFP49711 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.56□□□□□ -2
CTCFP49711 AL034555.1-201ENST00000604816 211 ntBASIC2.56□□□□□ -2
CTCFP49711 AC018889.1-201ENST00000605372 397 ntBASIC2.56□□□□□ -2
CTCFP49711 SNORD98-201ENST00000636377 67 ntBASIC2.56□□□□□ -2
CTCFP49711 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.56□□□□□ -2
CTCFP49711 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
CTCFP49711 AC092268.1-201ENST00000342691 405 ntBASIC2.55□□□□□ -2
CTCFP49711 snoU2_19.1-201ENST00000362361 80 ntBASIC2.55□□□□□ -2
CTCFP49711 RNU6-933P-201ENST00000384424 107 ntBASIC2.55□□□□□ -2
CTCFP49711 Y_RNA.504-201ENST00000384481 104 ntBASIC2.55□□□□□ -2
CTCFP49711 RNU6-1274P-201ENST00000384557 107 ntBASIC2.55□□□□□ -2
CTCFP49711 SNORA41-201ENST00000384675 132 ntBASIC2.55□□□□□ -2
CTCFP49711 MIR521-1-201ENST00000384902 87 ntBASIC2.55□□□□□ -2
CTCFP49711 MIR548K-201ENST00000408406 116 ntBASIC2.55□□□□□ -2
CTCFP49711 AL590135.1-201ENST00000422215 156 ntBASIC2.55□□□□□ -2
CTCFP49711 AC019205.3-201ENST00000424573 156 ntBASIC2.55□□□□□ -2
CTCFP49711 AC098614.3-201ENST00000438957 440 ntBASIC2.55□□□□□ -2
CTCFP49711 AL161788.1-201ENST00000441805 169 ntBASIC2.55□□□□□ -2
CTCFP49711 AC016700.2-201ENST00000446011 156 ntBASIC2.55□□□□□ -2
CTCFP49711 AC015911.1-201ENST00000495111 156 ntBASIC2.55□□□□□ -2
CTCFP49711 AC016632.1-201ENST00000503994 196 ntBASIC2.55□□□□□ -2
CTCFP49711 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.55□□□□□ -2
CTCFP49711 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.55□□□□□ -2
CTCFP49711 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.55□□□□□ -2
CTCFP49711 MIR3136-201ENST00000583498 78 ntBASIC2.55□□□□□ -2
CTCFP49711 AL078605.1-201ENST00000603529 500 ntBASIC2.55□□□□□ -2
CTCFP49711 AL360085.1-201ENST00000604713 532 ntBASIC2.55□□□□□ -2
CTCFP49711 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.55□□□□□ -2
CTCFP49711 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
CTCFP49711 SNORD81.2-201ENST00000365153 76 ntBASIC2.54□□□□□ -2
CTCFP49711 Y_RNA.339-201ENST00000365325 102 ntBASIC2.54□□□□□ -2
CTCFP49711 SNORA6-201ENST00000384033 151 ntBASIC2.54□□□□□ -2
CTCFP49711 SNORA36A-201ENST00000384221 132 ntBASIC2.54□□□□□ -2
CTCFP49711 U8.10-201ENST00000384260 133 ntBASIC2.54□□□□□ -2
CTCFP49711 RNU6-790P-201ENST00000384479 105 ntBASIC2.54□□□□□ -2
CTCFP49711 RNU6-306P-201ENST00000384617 107 ntBASIC2.54□□□□□ -2
CTCFP49711 SNORA40.18-201ENST00000391200 128 ntBASIC2.54□□□□□ -2
CTCFP49711 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.54□□□□□ -2
CTCFP49711 AL139396.1-201ENST00000421137 167 ntBASIC2.54□□□□□ -2
CTCFP49711 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.54□□□□□ -2
CTCFP49711 DAP3P1-201ENST00000441522 278 ntBASIC2.54□□□□□ -2
CTCFP49711 SNORA48.11-201ENST00000517015 89 ntBASIC2.54□□□□□ -2
CTCFP49711 RNU6-586P-201ENST00000517265 104 ntBASIC2.54□□□□□ -2
CTCFP49711 IGLV3-17-201ENST00000519099 244 ntBASIC2.54□□□□□ -2
CTCFP49711 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.54□□□□□ -2
CTCFP49711 AC124303.1-201ENST00000605703 360 ntBASIC2.54□□□□□ -2
CTCFP49711 AC005296.1-201ENST00000616145 209 ntBASIC2.54□□□□□ -2
CTCFP49711 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC2.54□□□□□ -2
CTCFP49711 MIR6132-201ENST00000622083 109 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms