Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AC104564.1-201ENST00000493028 407 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 AC096745.1-201ENST00000509945 370 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 AC092436.3-201ENST00000511788 257 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 AC107393.1-201ENST00000512403 346 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 RNU4-49P-201ENST00000516080 140 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 AC121758.2-201ENST00000553271 193 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 TRAV32-201ENST00000553993 340 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.94□□□□□ -2.1
TNFRSF4P43489 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.94□□□□□ -2.1
TNFRSF4P43489 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.94□□□□□ -2.1
TNFRSF4P43489 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
TNFRSF4P43489 AC092268.1-201ENST00000342691 405 ntBASIC1.93□□□□□ -2.1
TNFRSF4P43489 RNU6-743P-201ENST00000364151 106 ntBASIC1.93□□□□□ -2.1
TNFRSF4P43489 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.93□□□□□ -2.1
TNFRSF4P43489 RNU6-933P-201ENST00000384424 107 ntBASIC1.93□□□□□ -2.1
TNFRSF4P43489 RNU6-831P-201ENST00000384548 107 ntBASIC1.93□□□□□ -2.1
TNFRSF4P43489 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.93□□□□□ -2.1
TNFRSF4P43489 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.93□□□□□ -2.1
TNFRSF4P43489 AMD1P1-201ENST00000457220 922 ntBASIC1.93□□□□□ -2.1
TNFRSF4P43489 PPP1R2P5-201ENST00000457256 603 ntBASIC1.93□□□□□ -2.1
TNFRSF4P43489 AC145146.1-201ENST00000496370 254 ntBASIC1.93□□□□□ -2.1
TNFRSF4P43489 MTCO2P30-201ENST00000503662 364 ntBASIC1.93□□□□□ -2.1
TNFRSF4P43489 AC016632.1-201ENST00000503994 196 ntBASIC1.93□□□□□ -2.1
TNFRSF4P43489 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.93□□□□□ -2.1
TNFRSF4P43489 RNU1-40P-201ENST00000516816 164 ntBASIC1.93□□□□□ -2.1
TNFRSF4P43489 RNU1-97P-201ENST00000516872 164 ntBASIC1.93□□□□□ -2.1
TNFRSF4P43489 IGLV3-17-201ENST00000519099 244 ntBASIC1.93□□□□□ -2.1
TNFRSF4P43489 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.93□□□□□ -2.1
TNFRSF4P43489 AC007375.1-201ENST00000554513 578 ntBASIC1.93□□□□□ -2.1
TNFRSF4P43489 AP001094.1-201ENST00000579805 193 ntBASIC1.93□□□□□ -2.1
TNFRSF4P43489 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.93□□□□□ -2.1
TNFRSF4P43489 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.93□□□□□ -2.1
TNFRSF4P43489 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.93□□□□□ -2.1
TNFRSF4P43489 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.92□□□□□ -2.1
TNFRSF4P43489 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
TNFRSF4P43489 RNU4-15P-201ENST00000362613 141 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 RNU6-562P-201ENST00000362731 107 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 Y_RNA.140-201ENST00000363474 103 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 Y_RNA.212-201ENST00000364177 102 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 RNU6-1317P-201ENST00000364582 104 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 SNORD32A-201ENST00000364805 84 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 SNORA80E-201ENST00000384744 137 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 MIR17-201ENST00000385012 84 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 RNU6-510P-201ENST00000391239 108 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
TNFRSF4P43489 MIR1294-201ENST00000408503 142 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 RNU6-325P-201ENST00000411132 105 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 SRIP3-201ENST00000413200 219 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.92□□□□□ -2.1
TNFRSF4P43489 EIF1AXP1-201ENST00000419267 435 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 AL590632.1-201ENST00000424289 371 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 MTND3P9-201ENST00000429526 346 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 GPM6BP3-201ENST00000442797 145 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 AL031659.1-201ENST00000447075 539 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 U8.21-201ENST00000459536 136 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 RPL23AP63-201ENST00000498752 471 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 AC116353.2-201ENST00000505332 712 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.92□□□□□ -2.1
TNFRSF4P43489 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.92□□□□□ -2.1
TNFRSF4P43489 PTP4A1P4-201ENST00000512479 322 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 RNU6-864P-201ENST00000516256 108 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.92□□□□□ -2.1
TNFRSF4P43489 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.92□□□□□ -2.1
TNFRSF4P43489 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.92□□□□□ -2.1
TNFRSF4P43489 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.92□□□□□ -2.1
TNFRSF4P43489 MIR4287-201ENST00000579398 78 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 AC100830.2-201ENST00000581636 240 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 MIR3672-201ENST00000584290 82 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 SNRPGP19-201ENST00000603826 189 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 AP001836.1-201ENST00000604675 523 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 AP000654.2-201ENST00000605633 586 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 MIR6840-201ENST00000611937 71 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 AL138726.1-201ENST00000614873 333 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 AC099654.14-201ENST00000638599 341 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 MTND4P23-201ENST00000447723 1363 ntBASIC1.92□□□□□ -2.1
TNFRSF4P43489 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC1.92□□□□□ -2.1
TNFRSF4P43489 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.92□□□□□ -2.1
TNFRSF4P43489 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.91□□□□□ -2.1
TNFRSF4P43489 ZNF720P1-201ENST00000562403 1939 ntBASIC1.91□□□□□ -2.1
TNFRSF4P43489 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
TNFRSF4P43489 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC1.91□□□□□ -2.1
TNFRSF4P43489 SNORD14D-201ENST00000384390 87 ntBASIC1.91□□□□□ -2.1
TNFRSF4P43489 RNU6-790P-201ENST00000384479 105 ntBASIC1.91□□□□□ -2.1
TNFRSF4P43489 MIR1262-201ENST00000408276 93 ntBASIC1.91□□□□□ -2.1
TNFRSF4P43489 RPL21P111-201ENST00000418453 477 ntBASIC1.91□□□□□ -2.1
TNFRSF4P43489 RPL23AP95-201ENST00000426806 265 ntBASIC1.91□□□□□ -2.1
TNFRSF4P43489 AL133396.1-201ENST00000432048 687 ntBASIC1.91□□□□□ -2.1
TNFRSF4P43489 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.91□□□□□ -2.1
TNFRSF4P43489 AL021397.1-201ENST00000451806 248 ntBASIC1.91□□□□□ -2.1
TNFRSF4P43489 RNU7-187P-201ENST00000458985 68 ntBASIC1.91□□□□□ -2.1
TNFRSF4P43489 AC130509.1-201ENST00000464158 433 ntBASIC1.91□□□□□ -2.1
TNFRSF4P43489 RPL9P9-202ENST00000466501 579 ntBASIC1.91□□□□□ -2.1
TNFRSF4P43489 SNORA31.16-201ENST00000516773 139 ntBASIC1.91□□□□□ -2.1
TNFRSF4P43489 RNU6-612P-201ENST00000516909 102 ntBASIC1.91□□□□□ -2.1
TNFRSF4P43489 AC005668.1-201ENST00000571142 476 ntBASIC1.91□□□□□ -2.1
TNFRSF4P43489 MIR4742-201ENST00000581069 85 ntBASIC1.91□□□□□ -2.1
TNFRSF4P43489 AC023043.2-201ENST00000589678 1026 ntBASIC1.91□□□□□ -2.1
TNFRSF4P43489 AC002984.1-201ENST00000591692 448 ntBASIC1.91□□□□□ -2.1
TNFRSF4P43489 AC016727.1-205ENST00000605437 569 ntBASIC1.91□□□□□ -2.1
TNFRSF4P43489 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 161.2 ms