Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 SNORA36A-201ENST00000384221 132 ntBASIC2.55□□□□□ -2
PTPN9P43378 MIR218-1-201ENST00000384999 110 ntBASIC2.55□□□□□ -2
PTPN9P43378 MIR559-201ENST00000385188 96 ntBASIC2.55□□□□□ -2
PTPN9P43378 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.55□□□□□ -2
PTPN9P43378 RNU6-220P-201ENST00000390919 107 ntBASIC2.55□□□□□ -2
PTPN9P43378 RNU6-700P-201ENST00000391043 107 ntBASIC2.55□□□□□ -2
PTPN9P43378 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.55□□□□□ -2
PTPN9P43378 RPL23AP50-201ENST00000434149 455 ntBASIC2.55□□□□□ -2
PTPN9P43378 AC104389.3-201ENST00000445629 235 ntBASIC2.55□□□□□ -2
PTPN9P43378 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.55□□□□□ -2
PTPN9P43378 OR2AQ1P-201ENST00000451972 200 ntBASIC2.55□□□□□ -2
PTPN9P43378 AL353752.1-201ENST00000454946 260 ntBASIC2.55□□□□□ -2
PTPN9P43378 AC087477.1-201ENST00000465747 340 ntBASIC2.55□□□□□ -2
PTPN9P43378 AC027575.1-201ENST00000481064 460 ntBASIC2.55□□□□□ -2
PTPN9P43378 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.55□□□□□ -2
PTPN9P43378 AC022493.2-201ENST00000506122 481 ntBASIC2.55□□□□□ -2
PTPN9P43378 RNU7-175P-201ENST00000515915 61 ntBASIC2.55□□□□□ -2
PTPN9P43378 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.55□□□□□ -2
PTPN9P43378 AL670379.2-201ENST00000604983 252 ntBASIC2.55□□□□□ -2
PTPN9P43378 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC2.55□□□□□ -2
PTPN9P43378 MIR5739-201ENST00000619803 80 ntBASIC2.55□□□□□ -2
PTPN9P43378 AC090971.5-201ENST00000621102 293 ntBASIC2.55□□□□□ -2
PTPN9P43378 AC069528.2-201ENST00000624849 1991 ntBASIC2.55□□□□□ -2
PTPN9P43378 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.54□□□□□ -2
PTPN9P43378 MIR6073-201ENST00000352083 89 ntBASIC2.54□□□□□ -2
PTPN9P43378 Y_RNA.112-201ENST00000363250 102 ntBASIC2.54□□□□□ -2
PTPN9P43378 RNA5SP240-201ENST00000365355 128 ntBASIC2.54□□□□□ -2
PTPN9P43378 RNU6-17P-201ENST00000384245 107 ntBASIC2.54□□□□□ -2
PTPN9P43378 RNU6-18P-201ENST00000384527 107 ntBASIC2.54□□□□□ -2
PTPN9P43378 SNORA12.2-201ENST00000391040 156 ntBASIC2.54□□□□□ -2
PTPN9P43378 AC099799.1-201ENST00000439809 192 ntBASIC2.54□□□□□ -2
PTPN9P43378 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.54□□□□□ -2
PTPN9P43378 CYP2C59P-201ENST00000457790 269 ntBASIC2.54□□□□□ -2
PTPN9P43378 RNU6-1198P-201ENST00000516904 67 ntBASIC2.54□□□□□ -2
PTPN9P43378 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.54□□□□□ -2
PTPN9P43378 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.54□□□□□ -2
PTPN9P43378 AC090616.3-201ENST00000582184 217 ntBASIC2.54□□□□□ -2
PTPN9P43378 AC010928.2-201ENST00000588017 287 ntBASIC2.54□□□□□ -2
PTPN9P43378 AC044792.1-201ENST00000593294 196 ntBASIC2.54□□□□□ -2
PTPN9P43378 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.54□□□□□ -2
PTPN9P43378 AC100812.1-201ENST00000607622 580 ntBASIC2.54□□□□□ -2
PTPN9P43378 AC008121.3-201ENST00000618726 433 ntBASIC2.54□□□□□ -2
PTPN9P43378 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.54□□□□□ -2
PTPN9P43378 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
PTPN9P43378 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.53□□□□□ -2
PTPN9P43378 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
PTPN9P43378 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.53□□□□□ -2
PTPN9P43378 Y_RNA.48-201ENST00000362710 103 ntBASIC2.53□□□□□ -2
PTPN9P43378 Y_RNA.252-201ENST00000364556 101 ntBASIC2.53□□□□□ -2
PTPN9P43378 Y_RNA.463-201ENST00000384271 102 ntBASIC2.53□□□□□ -2
PTPN9P43378 MIR153-2-201ENST00000385225 87 ntBASIC2.53□□□□□ -2
PTPN9P43378 AC007098.1-201ENST00000420122 367 ntBASIC2.53□□□□□ -2
PTPN9P43378 AC003685.2-201ENST00000422795 395 ntBASIC2.53□□□□□ -2
PTPN9P43378 AL590556.1-201ENST00000423231 483 ntBASIC2.53□□□□□ -2
PTPN9P43378 AL353997.1-201ENST00000432936 108 ntBASIC2.53□□□□□ -2
PTPN9P43378 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.53□□□□□ -2
PTPN9P43378 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.53□□□□□ -2
PTPN9P43378 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC2.53□□□□□ -2
PTPN9P43378 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.53□□□□□ -2
PTPN9P43378 AC140059.1-201ENST00000489238 361 ntBASIC2.53□□□□□ -2
PTPN9P43378 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.53□□□□□ -2
PTPN9P43378 RNA5SP82-201ENST00000516707 92 ntBASIC2.53□□□□□ -2
PTPN9P43378 Y_RNA.701-201ENST00000516812 110 ntBASIC2.53□□□□□ -2
PTPN9P43378 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.53□□□□□ -2
PTPN9P43378 AC109329.2-201ENST00000519658 482 ntBASIC2.53□□□□□ -2
PTPN9P43378 AC018630.3-201ENST00000542637 96 ntBASIC2.53□□□□□ -2
PTPN9P43378 MIR5194-201ENST00000582634 120 ntBASIC2.53□□□□□ -2
PTPN9P43378 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.53□□□□□ -2
PTPN9P43378 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.53□□□□□ -2
PTPN9P43378 AC067747.1-201ENST00000608026 250 ntBASIC2.53□□□□□ -2
PTPN9P43378 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC2.53□□□□□ -2
PTPN9P43378 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.53□□□□□ -2
PTPN9P43378 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC2.53□□□□□ -2
PTPN9P43378 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.53□□□□□ -2
PTPN9P43378 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.53□□□□□ -2
PTPN9P43378 AC091925.1-201ENST00000623204 462 ntBASIC2.53□□□□□ -2
PTPN9P43378 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.53□□□□□ -2
PTPN9P43378 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.53□□□□□ -2.01
PTPN9P43378 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
PTPN9P43378 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
PTPN9P43378 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
PTPN9P43378 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
PTPN9P43378 U8.10-201ENST00000384260 133 ntBASIC2.52□□□□□ -2.01
PTPN9P43378 HMGB3P2-201ENST00000411913 584 ntBASIC2.52□□□□□ -2.01
PTPN9P43378 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC2.52□□□□□ -2.01
PTPN9P43378 AC007215.1-201ENST00000464893 276 ntBASIC2.52□□□□□ -2.01
PTPN9P43378 AC004584.2-201ENST00000570407 410 ntBASIC2.52□□□□□ -2.01
PTPN9P43378 PCGEM1.1-201ENST00000613431 131 ntBASIC2.52□□□□□ -2.01
PTPN9P43378 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.52□□□□□ -2.01
PTPN9P43378 MIR1291-201ENST00000627649 87 ntBASIC2.52□□□□□ -2.01
PTPN9P43378 AC134503.1-201ENST00000633048 54 ntBASIC2.52□□□□□ -2.01
PTPN9P43378 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.52□□□□□ -2.01
PTPN9P43378 AL136360.1-201ENST00000503377 1900 ntBASIC2.52□□□□□ -2.01
PTPN9P43378 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
PTPN9P43378 Z82209.1-201ENST00000422141 2135 ntBASIC2.51□□□□□ -2.01
PTPN9P43378 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
PTPN9P43378 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
PTPN9P43378 AC135776.4-201ENST00000624300 1904 ntBASIC2.51□□□□□ -2.01
PTPN9P43378 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.51□□□□□ -2.01
PTPN9P43378 Y_RNA.128-201ENST00000363391 112 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms