Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 AC011494.1-201ENST00000596454 237 ntBASIC2.32□□□□□ -2.04
MSH2P43246 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.32□□□□□ -2.04
MSH2P43246 AC099654.5-201ENST00000636479 350 ntBASIC2.32□□□□□ -2.04
MSH2P43246 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.32□□□□□ -2.04
MSH2P43246 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.32□□□□□ -2.04
MSH2P43246 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
MSH2P43246 RNA5SP37-201ENST00000365420 130 ntBASIC2.31□□□□□ -2.04
MSH2P43246 Y_RNA.474-201ENST00000384341 102 ntBASIC2.31□□□□□ -2.04
MSH2P43246 RNU4-14P-201ENST00000410858 122 ntBASIC2.31□□□□□ -2.04
MSH2P43246 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.31□□□□□ -2.04
MSH2P43246 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.31□□□□□ -2.04
MSH2P43246 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.31□□□□□ -2.04
MSH2P43246 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC2.31□□□□□ -2.04
MSH2P43246 FO393415.2-201ENST00000480085 343 ntBASIC2.31□□□□□ -2.04
MSH2P43246 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC2.31□□□□□ -2.04
MSH2P43246 AC090255.1-201ENST00000495779 349 ntBASIC2.31□□□□□ -2.04
MSH2P43246 AC005741.1-201ENST00000511094 432 ntBASIC2.31□□□□□ -2.04
MSH2P43246 RNU6-507P-201ENST00000516045 100 ntBASIC2.31□□□□□ -2.04
MSH2P43246 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.31□□□□□ -2.04
MSH2P43246 AC018630.3-201ENST00000542637 96 ntBASIC2.31□□□□□ -2.04
MSH2P43246 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC2.31□□□□□ -2.04
MSH2P43246 AC109446.1-201ENST00000566172 220 ntBASIC2.31□□□□□ -2.04
MSH2P43246 AC078899.2-201ENST00000595282 212 ntBASIC2.31□□□□□ -2.04
MSH2P43246 SNRPGP17-201ENST00000603780 214 ntBASIC2.31□□□□□ -2.04
MSH2P43246 PCGEM1.1-201ENST00000613431 131 ntBASIC2.31□□□□□ -2.04
MSH2P43246 AC025253.1-201ENST00000613623 543 ntBASIC2.31□□□□□ -2.04
MSH2P43246 AC104260.1-201ENST00000616660 539 ntBASIC2.31□□□□□ -2.04
MSH2P43246 MIR6766-201ENST00000622641 72 ntBASIC2.31□□□□□ -2.04
MSH2P43246 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.31□□□□□ -2.04
MSH2P43246 MTND5P9-201ENST00000503854 1755 ntBASIC2.31□□□□□ -2.04
MSH2P43246 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.3□□□□□ -2.04
MSH2P43246 SNORD115-3-201ENST00000363100 82 ntBASIC2.3□□□□□ -2.04
MSH2P43246 SNORD32B-201ENST00000364460 84 ntBASIC2.3□□□□□ -2.04
MSH2P43246 Y_RNA.473-201ENST00000384333 102 ntBASIC2.3□□□□□ -2.04
MSH2P43246 RNU6-1009P-201ENST00000390996 107 ntBASIC2.3□□□□□ -2.04
MSH2P43246 Y_RNA.594-201ENST00000410373 140 ntBASIC2.3□□□□□ -2.04
MSH2P43246 RNU6-1050P-201ENST00000410388 107 ntBASIC2.3□□□□□ -2.04
MSH2P43246 RNA5SP494-201ENST00000410653 129 ntBASIC2.3□□□□□ -2.04
MSH2P43246 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.3□□□□□ -2.04
MSH2P43246 CBX3P6-201ENST00000430257 527 ntBASIC2.3□□□□□ -2.04
MSH2P43246 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.3□□□□□ -2.04
MSH2P43246 AL353705.4-201ENST00000449661 238 ntBASIC2.3□□□□□ -2.04
MSH2P43246 Y_RNA.635-201ENST00000459041 101 ntBASIC2.3□□□□□ -2.04
MSH2P43246 RPL23AP75-201ENST00000491601 451 ntBASIC2.3□□□□□ -2.04
MSH2P43246 AF186996.7-201ENST00000492781 209 ntBASIC2.3□□□□□ -2.04
MSH2P43246 Y_RNA.670-201ENST00000516255 105 ntBASIC2.3□□□□□ -2.04
MSH2P43246 RNA5SP24-201ENST00000516478 95 ntBASIC2.3□□□□□ -2.04
MSH2P43246 RNU6-965P-201ENST00000516721 96 ntBASIC2.3□□□□□ -2.04
MSH2P43246 AC134698.4-201ENST00000523451 826 ntBASIC2.3□□□□□ -2.04
MSH2P43246 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.3□□□□□ -2.04
MSH2P43246 MIR5696-201ENST00000578474 85 ntBASIC2.3□□□□□ -2.04
MSH2P43246 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.3□□□□□ -2.04
MSH2P43246 MIR4273-201ENST00000582824 84 ntBASIC2.3□□□□□ -2.04
MSH2P43246 AC016727.1-205ENST00000605437 569 ntBASIC2.3□□□□□ -2.04
MSH2P43246 AC103810.6-201ENST00000606708 136 ntBASIC2.3□□□□□ -2.04
MSH2P43246 AC009994.1-201ENST00000606889 253 ntBASIC2.3□□□□□ -2.04
MSH2P43246 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.3□□□□□ -2.04
MSH2P43246 AC005520.5-201ENST00000613926 164 ntBASIC2.3□□□□□ -2.04
MSH2P43246 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
MSH2P43246 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.3□□□□□ -2.04
MSH2P43246 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.3□□□□□ -2.04
MSH2P43246 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
MSH2P43246 AC131280.1-202ENST00000624067 4211 ntBASIC2.29□□□□□ -2.04
MSH2P43246 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
MSH2P43246 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.29□□□□□ -2.04
MSH2P43246 RNU6-378P-201ENST00000384324 107 ntBASIC2.29□□□□□ -2.04
MSH2P43246 MIR17-201ENST00000385012 84 ntBASIC2.29□□□□□ -2.04
MSH2P43246 SNORA12-201ENST00000391162 147 ntBASIC2.29□□□□□ -2.04
MSH2P43246 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.29□□□□□ -2.04
MSH2P43246 snoU13.6-201ENST00000458785 104 ntBASIC2.29□□□□□ -2.04
MSH2P43246 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC2.29□□□□□ -2.04
MSH2P43246 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2.29□□□□□ -2.04
MSH2P43246 Y_RNA.708-201ENST00000516950 96 ntBASIC2.29□□□□□ -2.04
MSH2P43246 AC022616.8-201ENST00000533569 253 ntBASIC2.29□□□□□ -2.04
MSH2P43246 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.29□□□□□ -2.04
MSH2P43246 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.29□□□□□ -2.04
MSH2P43246 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.29□□□□□ -2.04
MSH2P43246 AP000654.2-201ENST00000605633 586 ntBASIC2.29□□□□□ -2.04
MSH2P43246 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.29□□□□□ -2.04
MSH2P43246 IGHVIII-44-202ENST00000636235 289 ntBASIC2.29□□□□□ -2.04
MSH2P43246 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.29□□□□□ -2.04
MSH2P43246 RNU6-1159P-201ENST00000362933 107 ntBASIC2.28□□□□□ -2.04
MSH2P43246 U3.9-201ENST00000363823 204 ntBASIC2.28□□□□□ -2.04
MSH2P43246 MIR518A2-201ENST00000384966 87 ntBASIC2.28□□□□□ -2.04
MSH2P43246 MIR208B-201ENST00000401172 77 ntBASIC2.28□□□□□ -2.04
MSH2P43246 AL358453.1-201ENST00000422522 250 ntBASIC2.28□□□□□ -2.04
MSH2P43246 IPO7P1-201ENST00000442031 636 ntBASIC2.28□□□□□ -2.04
MSH2P43246 AC087477.1-201ENST00000465747 340 ntBASIC2.28□□□□□ -2.04
MSH2P43246 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.28□□□□□ -2.04
MSH2P43246 EIF4A1P12-201ENST00000551910 141 ntBASIC2.28□□□□□ -2.04
MSH2P43246 MIR5007-201ENST00000583098 95 ntBASIC2.28□□□□□ -2.04
MSH2P43246 AL158827.2-201ENST00000602494 330 ntBASIC2.28□□□□□ -2.04
MSH2P43246 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.28□□□□□ -2.04
MSH2P43246 AC009229.3-201ENST00000608056 282 ntBASIC2.28□□□□□ -2.04
MSH2P43246 AC046143.2-201ENST00000609789 160 ntBASIC2.28□□□□□ -2.04
MSH2P43246 AL132765.2-201ENST00000610812 351 ntBASIC2.28□□□□□ -2.04
MSH2P43246 MIR6840-201ENST00000611937 71 ntBASIC2.28□□□□□ -2.04
MSH2P43246 AC098657.3-201ENST00000620434 263 ntBASIC2.28□□□□□ -2.04
MSH2P43246 AL359757.2-201ENST00000624309 274 ntBASIC2.28□□□□□ -2.04
MSH2P43246 SCARNA4-201ENST00000629045 128 ntBASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 125.6 ms