Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC005562.2-201ENST00000618264 111 ntBASIC2.13□□□□□ -2.07
BDNFP23560 uc_338.20-201ENST00000621563 178 ntBASIC2.13□□□□□ -2.07
BDNFP23560 AL159152.1-201ENST00000635019 2587 ntBASIC2.13□□□□□ -2.07
BDNFP23560 WWP1P1-201ENST00000466609 2769 ntBASIC2.13□□□□□ -2.07
BDNFP23560 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
BDNFP23560 RNU6-414P-201ENST00000363705 104 ntBASIC2.12□□□□□ -2.07
BDNFP23560 RNU6-1317P-201ENST00000364582 104 ntBASIC2.12□□□□□ -2.07
BDNFP23560 RNU6-128P-201ENST00000383976 107 ntBASIC2.12□□□□□ -2.07
BDNFP23560 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC2.12□□□□□ -2.07
BDNFP23560 HMGB1P18-201ENST00000438801 619 ntBASIC2.12□□□□□ -2.07
BDNFP23560 AC069257.2-201ENST00000441819 155 ntBASIC2.12□□□□□ -2.07
BDNFP23560 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2.12□□□□□ -2.07
BDNFP23560 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.12□□□□□ -2.07
BDNFP23560 RPS29P27-201ENST00000463711 170 ntBASIC2.12□□□□□ -2.07
BDNFP23560 RPL36AP21-201ENST00000490372 323 ntBASIC2.12□□□□□ -2.07
BDNFP23560 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
BDNFP23560 AL512360.1-201ENST00000555346 234 ntBASIC2.12□□□□□ -2.07
BDNFP23560 NDUFAF4P1-201ENST00000559425 519 ntBASIC2.12□□□□□ -2.07
BDNFP23560 SNRPGP19-201ENST00000603826 189 ntBASIC2.12□□□□□ -2.07
BDNFP23560 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.12□□□□□ -2.07
BDNFP23560 AC092881.1-201ENST00000638218 2733 ntBASIC2.11□□□□□ -2.07
BDNFP23560 Y_RNA.231-201ENST00000364358 102 ntBASIC2.11□□□□□ -2.07
BDNFP23560 SNORA29-201ENST00000384183 140 ntBASIC2.11□□□□□ -2.07
BDNFP23560 MIR504-201ENST00000385065 83 ntBASIC2.11□□□□□ -2.07
BDNFP23560 RNU6-648P-201ENST00000410190 107 ntBASIC2.11□□□□□ -2.07
BDNFP23560 RNU2-16P-201ENST00000410712 136 ntBASIC2.11□□□□□ -2.07
BDNFP23560 SNRPEP10-201ENST00000420249 274 ntBASIC2.11□□□□□ -2.07
BDNFP23560 RNU6-835P-201ENST00000516974 104 ntBASIC2.11□□□□□ -2.07
BDNFP23560 HMGB1P33-201ENST00000563485 527 ntBASIC2.11□□□□□ -2.07
BDNFP23560 MIR5094-201ENST00000578766 85 ntBASIC2.11□□□□□ -2.07
BDNFP23560 AL162413.1-201ENST00000603198 110 ntBASIC2.11□□□□□ -2.07
BDNFP23560 SNRPGP20-201ENST00000604477 205 ntBASIC2.11□□□□□ -2.07
BDNFP23560 AC012493.3-201ENST00000604494 112 ntBASIC2.11□□□□□ -2.07
BDNFP23560 MIR8076-201ENST00000611401 83 ntBASIC2.11□□□□□ -2.07
BDNFP23560 TCL6_2.1-201ENST00000615162 119 ntBASIC2.11□□□□□ -2.07
BDNFP23560 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.1□□□□□ -2.07
BDNFP23560 Y_RNA.51-201ENST00000362725 102 ntBASIC2.1□□□□□ -2.07
BDNFP23560 RNA5SP160-201ENST00000364866 120 ntBASIC2.1□□□□□ -2.07
BDNFP23560 SNORA18.2-201ENST00000383865 132 ntBASIC2.1□□□□□ -2.07
BDNFP23560 MIR514A2-201ENST00000385131 88 ntBASIC2.1□□□□□ -2.07
BDNFP23560 MIR514A3-201ENST00000385132 88 ntBASIC2.1□□□□□ -2.07
BDNFP23560 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
BDNFP23560 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
BDNFP23560 RNA5SP338-201ENST00000410495 85 ntBASIC2.1□□□□□ -2.07
BDNFP23560 RPL21P111-201ENST00000418453 477 ntBASIC2.1□□□□□ -2.07
BDNFP23560 ERLEC1P1-201ENST00000433806 578 ntBASIC2.1□□□□□ -2.07
BDNFP23560 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.1□□□□□ -2.07
BDNFP23560 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.1□□□□□ -2.07
BDNFP23560 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC2.1□□□□□ -2.07
BDNFP23560 TRBVA-201ENST00000498804 316 ntBASIC2.1□□□□□ -2.07
BDNFP23560 RPL39P5-202ENST00000512505 151 ntBASIC2.1□□□□□ -2.07
BDNFP23560 SNORA31.17-201ENST00000516953 127 ntBASIC2.1□□□□□ -2.07
BDNFP23560 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
BDNFP23560 AL118558.2-201ENST00000556294 238 ntBASIC2.1□□□□□ -2.07
BDNFP23560 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.1□□□□□ -2.07
BDNFP23560 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.1□□□□□ -2.07
BDNFP23560 MIR5089-201ENST00000580047 84 ntBASIC2.1□□□□□ -2.07
BDNFP23560 DISC2.1-201ENST00000612827 205 ntBASIC2.1□□□□□ -2.07
BDNFP23560 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.1□□□□□ -2.07
BDNFP23560 MIR7843-201ENST00000622274 79 ntBASIC2.1□□□□□ -2.07
BDNFP23560 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.1□□□□□ -2.07
BDNFP23560 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.09□□□□□ -2.07
BDNFP23560 Y_RNA.123-201ENST00000363338 102 ntBASIC2.09□□□□□ -2.07
BDNFP23560 MIR520A-201ENST00000384862 85 ntBASIC2.09□□□□□ -2.07
BDNFP23560 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
BDNFP23560 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.09□□□□□ -2.07
BDNFP23560 HSPE1P21-201ENST00000438283 308 ntBASIC2.09□□□□□ -2.07
BDNFP23560 MTND1P29-201ENST00000448112 647 ntBASIC2.09□□□□□ -2.07
BDNFP23560 HMGN2P23-201ENST00000456759 269 ntBASIC2.09□□□□□ -2.07
BDNFP23560 AC096745.1-201ENST00000509945 370 ntBASIC2.09□□□□□ -2.07
BDNFP23560 AC067942.3-201ENST00000512025 362 ntBASIC2.09□□□□□ -2.07
BDNFP23560 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC2.09□□□□□ -2.07
BDNFP23560 CBX3P4-201ENST00000538909 354 ntBASIC2.09□□□□□ -2.07
BDNFP23560 AC026371.1-201ENST00000551867 419 ntBASIC2.09□□□□□ -2.07
BDNFP23560 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.09□□□□□ -2.07
BDNFP23560 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.09□□□□□ -2.07
BDNFP23560 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC2.09□□□□□ -2.07
BDNFP23560 AC068137.3-201ENST00000639191 341 ntBASIC2.09□□□□□ -2.07
BDNFP23560 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
BDNFP23560 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC2.09□□□□□ -2.08
BDNFP23560 MTND4P5-201ENST00000435821 1374 ntBASIC2.09□□□□□ -2.08
BDNFP23560 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
BDNFP23560 RNU4-20P-201ENST00000365601 151 ntBASIC2.08□□□□□ -2.08
BDNFP23560 MIR521-1-201ENST00000384902 87 ntBASIC2.08□□□□□ -2.08
BDNFP23560 RNU2-7P-201ENST00000410794 178 ntBASIC2.08□□□□□ -2.08
BDNFP23560 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC2.08□□□□□ -2.08
BDNFP23560 MTCO1P44-201ENST00000441935 243 ntBASIC2.08□□□□□ -2.08
BDNFP23560 MTND1P1-201ENST00000445453 368 ntBASIC2.08□□□□□ -2.08
BDNFP23560 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.08□□□□□ -2.08
BDNFP23560 AL021397.1-201ENST00000451806 248 ntBASIC2.08□□□□□ -2.08
BDNFP23560 RNA5SP481-201ENST00000516814 122 ntBASIC2.08□□□□□ -2.08
BDNFP23560 RNU1-40P-201ENST00000516816 164 ntBASIC2.08□□□□□ -2.08
BDNFP23560 RNU1-97P-201ENST00000516872 164 ntBASIC2.08□□□□□ -2.08
BDNFP23560 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2.08□□□□□ -2.08
BDNFP23560 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.08□□□□□ -2.08
BDNFP23560 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.08□□□□□ -2.08
BDNFP23560 AC024909.2-201ENST00000553035 286 ntBASIC2.08□□□□□ -2.08
BDNFP23560 MIR4285-201ENST00000581001 85 ntBASIC2.08□□□□□ -2.08
BDNFP23560 MIR3124-201ENST00000582636 67 ntBASIC2.08□□□□□ -2.08
BDNFP23560 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms