Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 MTCO2P3-201ENST00000442543 421 ntBASIC1.03□□□□□ -2.24
CPSF4O95639 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC1.03□□□□□ -2.24
CPSF4O95639 MTCO2P18-201ENST00000457151 658 ntBASIC1.03□□□□□ -2.24
CPSF4O95639 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC1.03□□□□□ -2.24
CPSF4O95639 RNU1-131P-201ENST00000458943 161 ntBASIC1.03□□□□□ -2.24
CPSF4O95639 AC007547.1-201ENST00000462177 490 ntBASIC1.03□□□□□ -2.24
CPSF4O95639 AC010409.1-201ENST00000487382 476 ntBASIC1.03□□□□□ -2.24
CPSF4O95639 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.03□□□□□ -2.24
CPSF4O95639 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC1.03□□□□□ -2.24
CPSF4O95639 RN7SKP298-201ENST00000515950 94 ntBASIC1.03□□□□□ -2.24
CPSF4O95639 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.03□□□□□ -2.24
CPSF4O95639 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC1.03□□□□□ -2.24
CPSF4O95639 EIF4A1P12-201ENST00000551910 141 ntBASIC1.03□□□□□ -2.24
CPSF4O95639 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.03□□□□□ -2.24
CPSF4O95639 AC006362.1-201ENST00000567392 174 ntBASIC1.03□□□□□ -2.24
CPSF4O95639 DLEU2_1.1-201ENST00000612089 120 ntBASIC1.03□□□□□ -2.24
CPSF4O95639 DLEU2_1.2-201ENST00000614667 120 ntBASIC1.03□□□□□ -2.24
CPSF4O95639 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.03□□□□□ -2.24
CPSF4O95639 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC1.03□□□□□ -2.24
CPSF4O95639 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
CPSF4O95639 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.25
CPSF4O95639 Y_RNA.1-201ENST00000352915 104 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 Y_RNA.296-201ENST00000364930 108 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 RNU6-438P-201ENST00000365561 103 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 RNU6-338P-201ENST00000383888 105 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 SNORA32.2-201ENST00000384049 122 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 RNU6-439P-201ENST00000384188 106 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 AP000275.1-201ENST00000411943 390 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 BTF3P4-201ENST00000418852 495 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 AC139712.2-201ENST00000424302 339 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.02□□□□□ -2.25
CPSF4O95639 RNU7-138P-201ENST00000459479 64 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 TOMM22P6-201ENST00000465035 409 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.02□□□□□ -2.25
CPSF4O95639 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.02□□□□□ -2.25
CPSF4O95639 HMGB1P29-201ENST00000505659 499 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 AC010424.1-201ENST00000506336 297 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 AC108078.1-201ENST00000508073 725 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 SNORA14.1-201ENST00000516113 141 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 RNU6-1098P-201ENST00000516772 96 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 AC021231.3-201ENST00000558497 370 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 SUB1P4-201ENST00000566062 339 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 CYP4A27P-201ENST00000567218 190 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.02□□□□□ -2.25
CPSF4O95639 AC005786.1-201ENST00000588553 154 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 AC087683.1-201ENST00000591187 441 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 VN1R80P-201ENST00000597126 338 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 AC116312.1-201ENST00000606841 314 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 AC009509.4-201ENST00000619202 509 ntBASIC1.02□□□□□ -2.25
CPSF4O95639 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.02□□□□□ -2.25
CPSF4O95639 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.02□□□□□ -2.25
CPSF4O95639 Y_RNA.77-201ENST00000362962 107 ntBASIC1.01□□□□□ -2.25
CPSF4O95639 Y_RNA.140-201ENST00000363474 103 ntBASIC1.01□□□□□ -2.25
CPSF4O95639 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.01□□□□□ -2.25
CPSF4O95639 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.01□□□□□ -2.25
CPSF4O95639 AF228730.1-201ENST00000397972 663 ntBASIC1.01□□□□□ -2.25
CPSF4O95639 MIR208B-201ENST00000401172 77 ntBASIC1.01□□□□□ -2.25
CPSF4O95639 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC1.01□□□□□ -2.25
CPSF4O95639 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC1.01□□□□□ -2.25
CPSF4O95639 RPS29P28-201ENST00000446439 141 ntBASIC1.01□□□□□ -2.25
CPSF4O95639 TPT1P7-201ENST00000458300 517 ntBASIC1.01□□□□□ -2.25
CPSF4O95639 RNU7-14P-201ENST00000459331 62 ntBASIC1.01□□□□□ -2.25
CPSF4O95639 MTCO3P38-201ENST00000468910 766 ntBASIC1.01□□□□□ -2.25
CPSF4O95639 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.01□□□□□ -2.25
CPSF4O95639 AC079140.3-201ENST00000511111 550 ntBASIC1.01□□□□□ -2.25
CPSF4O95639 AC091133.4-201ENST00000511142 308 ntBASIC1.01□□□□□ -2.25
CPSF4O95639 AC010486.3-201ENST00000511602 785 ntBASIC1.01□□□□□ -2.25
CPSF4O95639 SNORA40.12-201ENST00000516329 111 ntBASIC1.01□□□□□ -2.25
CPSF4O95639 RNU6-1038P-201ENST00000516516 104 ntBASIC1.01□□□□□ -2.25
CPSF4O95639 RNU6-567P-201ENST00000516746 107 ntBASIC1.01□□□□□ -2.25
CPSF4O95639 SNORA31.17-201ENST00000516953 127 ntBASIC1.01□□□□□ -2.25
CPSF4O95639 AC026407.1-201ENST00000518369 204 ntBASIC1.01□□□□□ -2.25
CPSF4O95639 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.01□□□□□ -2.25
CPSF4O95639 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.01□□□□□ -2.25
CPSF4O95639 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.01□□□□□ -2.25
CPSF4O95639 AC009994.1-201ENST00000606889 253 ntBASIC1.01□□□□□ -2.25
CPSF4O95639 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.01□□□□□ -2.25
CPSF4O95639 AC090582.1-201ENST00000636321 199 ntBASIC1.01□□□□□ -2.25
CPSF4O95639 AC245060.5-201ENST00000610778 3293 ntBASIC1.01□□□□□ -2.25
CPSF4O95639 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.01□□□□□ -2.25
CPSF4O95639 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
CPSF4O95639 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.01□□□□□ -2.25
CPSF4O95639 SNORD31B-201ENST00000364977 69 ntBASIC1□□□□□ -2.25
CPSF4O95639 MIR30A-201ENST00000385092 71 ntBASIC1□□□□□ -2.25
CPSF4O95639 Y_RNA.582-201ENST00000391023 95 ntBASIC1□□□□□ -2.25
CPSF4O95639 DEFB108C-201ENST00000400154 252 ntBASIC1□□□□□ -2.25
CPSF4O95639 RNU4-55P-201ENST00000410731 137 ntBASIC1□□□□□ -2.25
CPSF4O95639 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1□□□□□ -2.25
CPSF4O95639 CDK8P2-201ENST00000415020 547 ntBASIC1□□□□□ -2.25
CPSF4O95639 AP1B1P2-201ENST00000416196 106 ntBASIC1□□□□□ -2.25
CPSF4O95639 NCOR1P3-201ENST00000420479 303 ntBASIC1□□□□□ -2.25
CPSF4O95639 AC012306.1-201ENST00000423267 114 ntBASIC1□□□□□ -2.25
CPSF4O95639 MTCO2P16-201ENST00000436962 677 ntBASIC1□□□□□ -2.25
CPSF4O95639 TPTE2P5-203ENST00000458118 728 ntBASIC1□□□□□ -2.25
CPSF4O95639 RPL31P58-201ENST00000469001 379 ntBASIC1□□□□□ -2.25
CPSF4O95639 AC097473.1-201ENST00000508142 408 ntBASIC1□□□□□ -2.25
CPSF4O95639 RNU6-189P-201ENST00000516120 101 ntBASIC1□□□□□ -2.25
CPSF4O95639 RNU5F-4P-201ENST00000516581 114 ntBASIC1□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 156.5 ms