Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 Y_RNA.256-201ENST00000364594 104 ntBASIC1.8□□□□□ -2.12
SDC3O75056 MIR1294-201ENST00000408503 142 ntBASIC1.8□□□□□ -2.12
SDC3O75056 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
SDC3O75056 SNRPEP10-201ENST00000420249 274 ntBASIC1.8□□□□□ -2.12
SDC3O75056 UBE2V1P4-201ENST00000425374 344 ntBASIC1.8□□□□□ -2.12
SDC3O75056 RNA5SP57-201ENST00000459463 123 ntBASIC1.8□□□□□ -2.12
SDC3O75056 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.8□□□□□ -2.12
SDC3O75056 AC025465.4-201ENST00000513422 638 ntBASIC1.8□□□□□ -2.12
SDC3O75056 RNU6-567P-201ENST00000516746 107 ntBASIC1.8□□□□□ -2.12
SDC3O75056 AC109635.3-201ENST00000529536 185 ntBASIC1.8□□□□□ -2.12
SDC3O75056 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.8□□□□□ -2.12
SDC3O75056 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.8□□□□□ -2.12
SDC3O75056 TPRKBP2-201ENST00000565969 475 ntBASIC1.8□□□□□ -2.12
SDC3O75056 AC078795.3-201ENST00000602913 472 ntBASIC1.8□□□□□ -2.12
SDC3O75056 AL022345.1-201ENST00000607292 135 ntBASIC1.8□□□□□ -2.12
SDC3O75056 AC005520.5-201ENST00000613926 164 ntBASIC1.8□□□□□ -2.12
SDC3O75056 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.8□□□□□ -2.12
SDC3O75056 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.8□□□□□ -2.12
SDC3O75056 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
SDC3O75056 Y_RNA.3-201ENST00000362331 103 ntBASIC1.79□□□□□ -2.12
SDC3O75056 Y_RNA.9-201ENST00000362354 101 ntBASIC1.79□□□□□ -2.12
SDC3O75056 Y_RNA.38-201ENST00000362617 102 ntBASIC1.79□□□□□ -2.12
SDC3O75056 RNY4P14-201ENST00000363656 96 ntBASIC1.79□□□□□ -2.12
SDC3O75056 Y_RNA.402-201ENST00000383972 102 ntBASIC1.79□□□□□ -2.12
SDC3O75056 RNU6-214P-201ENST00000384130 107 ntBASIC1.79□□□□□ -2.12
SDC3O75056 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
SDC3O75056 MIR1283-2-201ENST00000408621 87 ntBASIC1.79□□□□□ -2.12
SDC3O75056 MTCO1P21-201ENST00000416634 589 ntBASIC1.79□□□□□ -2.12
SDC3O75056 AC244636.1-201ENST00000421152 228 ntBASIC1.79□□□□□ -2.12
SDC3O75056 MRPS10P2-201ENST00000431226 381 ntBASIC1.79□□□□□ -2.12
SDC3O75056 NDUFA5P4-201ENST00000436704 385 ntBASIC1.79□□□□□ -2.12
SDC3O75056 MTND2P29-201ENST00000438595 412 ntBASIC1.79□□□□□ -2.12
SDC3O75056 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.79□□□□□ -2.12
SDC3O75056 HMGN2P26-201ENST00000463169 339 ntBASIC1.79□□□□□ -2.12
SDC3O75056 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.79□□□□□ -2.12
SDC3O75056 AC093259.1-201ENST00000509755 300 ntBASIC1.79□□□□□ -2.12
SDC3O75056 AC092436.3-201ENST00000511788 257 ntBASIC1.79□□□□□ -2.12
SDC3O75056 Y_RNA.665-201ENST00000516177 98 ntBASIC1.79□□□□□ -2.12
SDC3O75056 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.79□□□□□ -2.12
SDC3O75056 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.79□□□□□ -2.12
SDC3O75056 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.79□□□□□ -2.12
SDC3O75056 AC016957.1-201ENST00000534895 309 ntBASIC1.79□□□□□ -2.12
SDC3O75056 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.79□□□□□ -2.12
SDC3O75056 AC104458.1-201ENST00000608243 463 ntBASIC1.79□□□□□ -2.12
SDC3O75056 U4.5-201ENST00000617137 123 ntBASIC1.79□□□□□ -2.12
SDC3O75056 AL136221.1-201ENST00000621449 509 ntBASIC1.79□□□□□ -2.12
SDC3O75056 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.79□□□□□ -2.12
SDC3O75056 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
SDC3O75056 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
SDC3O75056 RNU6-254P-201ENST00000363377 107 ntBASIC1.78□□□□□ -2.12
SDC3O75056 Y_RNA.504-201ENST00000384481 104 ntBASIC1.78□□□□□ -2.12
SDC3O75056 MIR597-201ENST00000384968 97 ntBASIC1.78□□□□□ -2.12
SDC3O75056 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.12
SDC3O75056 FGF7P8-201ENST00000402994 292 ntBASIC1.78□□□□□ -2.12
SDC3O75056 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.78□□□□□ -2.12
SDC3O75056 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.78□□□□□ -2.12
SDC3O75056 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.78□□□□□ -2.12
SDC3O75056 U8.21-201ENST00000459536 136 ntBASIC1.78□□□□□ -2.12
SDC3O75056 RPL9P9-202ENST00000466501 579 ntBASIC1.78□□□□□ -2.12
SDC3O75056 AC083904.1-201ENST00000487828 231 ntBASIC1.78□□□□□ -2.12
SDC3O75056 AC114801.2-201ENST00000503825 781 ntBASIC1.78□□□□□ -2.12
SDC3O75056 RPL39P5-202ENST00000512505 151 ntBASIC1.78□□□□□ -2.12
SDC3O75056 MTND1P5-201ENST00000517906 940 ntBASIC1.78□□□□□ -2.12
SDC3O75056 AC104576.1-201ENST00000524225 88 ntBASIC1.78□□□□□ -2.12
SDC3O75056 CYP4A27P-201ENST00000567218 190 ntBASIC1.78□□□□□ -2.12
SDC3O75056 CPDP1-201ENST00000579660 283 ntBASIC1.78□□□□□ -2.12
SDC3O75056 Z98751.3-201ENST00000604447 521 ntBASIC1.78□□□□□ -2.12
SDC3O75056 AP000654.2-201ENST00000605633 586 ntBASIC1.78□□□□□ -2.12
SDC3O75056 PCGEM1.1-201ENST00000613431 131 ntBASIC1.78□□□□□ -2.12
SDC3O75056 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.77□□□□□ -2.13
SDC3O75056 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.77□□□□□ -2.13
SDC3O75056 RNU1-58P-201ENST00000362413 163 ntBASIC1.77□□□□□ -2.13
SDC3O75056 Y_RNA.99-201ENST00000363138 105 ntBASIC1.77□□□□□ -2.13
SDC3O75056 RNU6-1164P-201ENST00000364428 107 ntBASIC1.77□□□□□ -2.13
SDC3O75056 RNU6-128P-201ENST00000383976 107 ntBASIC1.77□□□□□ -2.13
SDC3O75056 RNU6-26P-201ENST00000383985 107 ntBASIC1.77□□□□□ -2.13
SDC3O75056 SNORA8-201ENST00000384574 139 ntBASIC1.77□□□□□ -2.13
SDC3O75056 SNORA12-201ENST00000391162 147 ntBASIC1.77□□□□□ -2.13
SDC3O75056 RNA5SP212-201ENST00000391223 107 ntBASIC1.77□□□□□ -2.13
SDC3O75056 MIR450B-201ENST00000401182 78 ntBASIC1.77□□□□□ -2.13
SDC3O75056 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.77□□□□□ -2.13
SDC3O75056 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.77□□□□□ -2.13
SDC3O75056 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.77□□□□□ -2.13
SDC3O75056 AC007547.1-201ENST00000462177 490 ntBASIC1.77□□□□□ -2.13
SDC3O75056 TRBVA-201ENST00000498804 316 ntBASIC1.77□□□□□ -2.13
SDC3O75056 Y_RNA.655-201ENST00000515919 96 ntBASIC1.77□□□□□ -2.13
SDC3O75056 RNU6-1053P-201ENST00000515930 101 ntBASIC1.77□□□□□ -2.13
SDC3O75056 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.77□□□□□ -2.13
SDC3O75056 CYP2C61P-201ENST00000604072 290 ntBASIC1.77□□□□□ -2.13
SDC3O75056 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.77□□□□□ -2.13
SDC3O75056 U1.36-201ENST00000620684 176 ntBASIC1.77□□□□□ -2.13
SDC3O75056 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.76□□□□□ -2.13
SDC3O75056 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
SDC3O75056 MIR378A-201ENST00000362177 66 ntBASIC1.76□□□□□ -2.13
SDC3O75056 U3.9-201ENST00000363823 204 ntBASIC1.76□□□□□ -2.13
SDC3O75056 RNU6-1090P-201ENST00000364065 94 ntBASIC1.76□□□□□ -2.13
SDC3O75056 RNU6-1317P-201ENST00000364582 104 ntBASIC1.76□□□□□ -2.13
SDC3O75056 Y_RNA.554-201ENST00000384672 102 ntBASIC1.76□□□□□ -2.13
SDC3O75056 Y_RNA.615-201ENST00000410769 117 ntBASIC1.76□□□□□ -2.13
SDC3O75056 RNA5SP247-201ENST00000411181 105 ntBASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 165.9 ms