Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC021231.3-201ENST00000558497 370 ntBASIC1.62□□□□□ -2.15
MSH4O15457 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.62□□□□□ -2.15
MSH4O15457 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.62□□□□□ -2.15
MSH4O15457 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.62□□□□□ -2.15
MSH4O15457 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.62□□□□□ -2.15
MSH4O15457 Z98751.3-201ENST00000604447 521 ntBASIC1.62□□□□□ -2.15
MSH4O15457 AL512598.1-201ENST00000610158 273 ntBASIC1.62□□□□□ -2.15
MSH4O15457 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.62□□□□□ -2.15
MSH4O15457 AL590240.4-201ENST00000616908 390 ntBASIC1.62□□□□□ -2.15
MSH4O15457 AL450472.1-202ENST00000637286 180 ntBASIC1.62□□□□□ -2.15
MSH4O15457 MTND5P26-201ENST00000426018 1752 ntBASIC1.62□□□□□ -2.15
MSH4O15457 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.61□□□□□ -2.15
MSH4O15457 Y_RNA.4-201ENST00000362333 112 ntBASIC1.61□□□□□ -2.15
MSH4O15457 RNA5SP493-201ENST00000364115 91 ntBASIC1.61□□□□□ -2.15
MSH4O15457 RNU6-1322P-201ENST00000364309 107 ntBASIC1.61□□□□□ -2.15
MSH4O15457 SNORA69-201ENST00000383895 132 ntBASIC1.61□□□□□ -2.15
MSH4O15457 Y_RNA.436-201ENST00000384097 102 ntBASIC1.61□□□□□ -2.15
MSH4O15457 RNU2-66P-201ENST00000410650 161 ntBASIC1.61□□□□□ -2.15
MSH4O15457 MTCO3P41-201ENST00000414801 328 ntBASIC1.61□□□□□ -2.15
MSH4O15457 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.61□□□□□ -2.15
MSH4O15457 AL035666.1-201ENST00000446195 348 ntBASIC1.61□□□□□ -2.15
MSH4O15457 RNU6-261P-201ENST00000459506 102 ntBASIC1.61□□□□□ -2.15
MSH4O15457 Y_RNA.675-201ENST00000516389 149 ntBASIC1.61□□□□□ -2.15
MSH4O15457 RNU6-567P-201ENST00000516746 107 ntBASIC1.61□□□□□ -2.15
MSH4O15457 RNU6-323P-201ENST00000521915 107 ntBASIC1.61□□□□□ -2.15
MSH4O15457 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.61□□□□□ -2.15
MSH4O15457 AL118558.2-201ENST00000556294 238 ntBASIC1.61□□□□□ -2.15
MSH4O15457 CYP4A27P-201ENST00000567218 190 ntBASIC1.61□□□□□ -2.15
MSH4O15457 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.61□□□□□ -2.15
MSH4O15457 PCGEM1.1-201ENST00000613431 131 ntBASIC1.61□□□□□ -2.15
MSH4O15457 AC103705.1-201ENST00000619013 241 ntBASIC1.61□□□□□ -2.15
MSH4O15457 AL158209.2-201ENST00000619266 216 ntBASIC1.61□□□□□ -2.15
MSH4O15457 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.61□□□□□ -2.15
MSH4O15457 SNORA43.4-201ENST00000629559 138 ntBASIC1.61□□□□□ -2.15
MSH4O15457 MIR6863-201ENST00000636112 90 ntBASIC1.61□□□□□ -2.15
MSH4O15457 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.61□□□□□ -2.15
MSH4O15457 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.61□□□□□ -2.15
MSH4O15457 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
MSH4O15457 AC009541.1-201ENST00000438279 2662 ntBASIC1.6□□□□□ -2.15
MSH4O15457 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.6□□□□□ -2.15
MSH4O15457 U8.1-201ENST00000362843 134 ntBASIC1.6□□□□□ -2.15
MSH4O15457 RNU6-82P-201ENST00000363970 107 ntBASIC1.6□□□□□ -2.15
MSH4O15457 Y_RNA.332-201ENST00000365271 113 ntBASIC1.6□□□□□ -2.15
MSH4O15457 Y_RNA.378-201ENST00000365652 113 ntBASIC1.6□□□□□ -2.15
MSH4O15457 RNU6-38P-201ENST00000384085 107 ntBASIC1.6□□□□□ -2.15
MSH4O15457 RNU6-378P-201ENST00000384324 107 ntBASIC1.6□□□□□ -2.15
MSH4O15457 RPS20P15-201ENST00000412792 311 ntBASIC1.6□□□□□ -2.15
MSH4O15457 AL589823.1-201ENST00000429577 183 ntBASIC1.6□□□□□ -2.15
MSH4O15457 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC1.6□□□□□ -2.15
MSH4O15457 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.6□□□□□ -2.15
MSH4O15457 RNU6-1037P-201ENST00000459571 107 ntBASIC1.6□□□□□ -2.15
MSH4O15457 Y_RNA.676-201ENST00000516393 96 ntBASIC1.6□□□□□ -2.15
MSH4O15457 RNU6-612P-201ENST00000516909 102 ntBASIC1.6□□□□□ -2.15
MSH4O15457 AC087854.1-201ENST00000519706 414 ntBASIC1.6□□□□□ -2.15
MSH4O15457 AP005597.4-201ENST00000526762 229 ntBASIC1.6□□□□□ -2.15
MSH4O15457 AC087441.2-201ENST00000529141 262 ntBASIC1.6□□□□□ -2.15
MSH4O15457 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.6□□□□□ -2.15
MSH4O15457 AC025423.5-201ENST00000550230 219 ntBASIC1.6□□□□□ -2.15
MSH4O15457 AL161670.1-201ENST00000554348 137 ntBASIC1.6□□□□□ -2.15
MSH4O15457 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.6□□□□□ -2.15
MSH4O15457 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.6□□□□□ -2.15
MSH4O15457 AC022254.1-201ENST00000567857 235 ntBASIC1.6□□□□□ -2.15
MSH4O15457 MIR3169-201ENST00000578032 83 ntBASIC1.6□□□□□ -2.15
MSH4O15457 AC097065.2-201ENST00000608159 533 ntBASIC1.6□□□□□ -2.15
MSH4O15457 AC068792.1-201ENST00000621354 417 ntBASIC1.6□□□□□ -2.15
MSH4O15457 AC245060.5-201ENST00000610778 3293 ntBASIC1.6□□□□□ -2.15
MSH4O15457 ZNF209P-201ENST00000593450 2304 ntBASIC1.6□□□□□ -2.15
MSH4O15457 LINC02555-201ENST00000563933 1951 ntBASIC1.59□□□□□ -2.15
MSH4O15457 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.59□□□□□ -2.15
MSH4O15457 AC233981.2-201ENST00000611524 1614 ntBASIC1.59□□□□□ -2.15
MSH4O15457 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
MSH4O15457 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.59□□□□□ -2.15
MSH4O15457 Y_RNA.164-201ENST00000363709 102 ntBASIC1.59□□□□□ -2.15
MSH4O15457 RNU4-40P-201ENST00000364351 143 ntBASIC1.59□□□□□ -2.15
MSH4O15457 SNORD114-6-201ENST00000364393 72 ntBASIC1.59□□□□□ -2.15
MSH4O15457 Y_RNA.318-201ENST00000365131 97 ntBASIC1.59□□□□□ -2.15
MSH4O15457 RNU4-20P-201ENST00000365601 151 ntBASIC1.59□□□□□ -2.15
MSH4O15457 RNU6-259P-201ENST00000383999 107 ntBASIC1.59□□□□□ -2.15
MSH4O15457 Y_RNA.481-201ENST00000384373 102 ntBASIC1.59□□□□□ -2.15
MSH4O15457 Y_RNA.559-201ENST00000384686 107 ntBASIC1.59□□□□□ -2.15
MSH4O15457 SNORA48.1-201ENST00000390879 135 ntBASIC1.59□□□□□ -2.15
MSH4O15457 MIR208B-201ENST00000401172 77 ntBASIC1.59□□□□□ -2.15
MSH4O15457 RNU2-41P-201ENST00000410991 178 ntBASIC1.59□□□□□ -2.15
MSH4O15457 SNRPEP8-201ENST00000442866 260 ntBASIC1.59□□□□□ -2.15
MSH4O15457 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.59□□□□□ -2.15
MSH4O15457 SRRM1P2-201ENST00000464531 1192 ntBASIC1.59□□□□□ -2.15
MSH4O15457 ATP5EP1-201ENST00000510257 156 ntBASIC1.59□□□□□ -2.15
MSH4O15457 RNU6-1069P-201ENST00000516612 133 ntBASIC1.59□□□□□ -2.15
MSH4O15457 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.59□□□□□ -2.15
MSH4O15457 EIF4A1P12-201ENST00000551910 141 ntBASIC1.59□□□□□ -2.15
MSH4O15457 MIR4713-201ENST00000582691 75 ntBASIC1.59□□□□□ -2.15
MSH4O15457 AL357078.3-201ENST00000607528 618 ntBASIC1.59□□□□□ -2.15
MSH4O15457 AL121757.2-201ENST00000611223 313 ntBASIC1.59□□□□□ -2.15
MSH4O15457 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.59□□□□□ -2.15
MSH4O15457 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.16
MSH4O15457 AP000648.3-201ENST00000623539 4507 ntBASIC1.58□□□□□ -2.16
MSH4O15457 CBX3P1-201ENST00000325243 554 ntBASIC1.58□□□□□ -2.16
MSH4O15457 RNU6-1085P-201ENST00000363576 107 ntBASIC1.58□□□□□ -2.16
MSH4O15457 Y_RNA.194-201ENST00000363985 102 ntBASIC1.58□□□□□ -2.16
MSH4O15457 RNU6-438P-201ENST00000365561 103 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 200 ms