Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.36□□□□□ -2.19
TRAV40A0A0B4J280 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
TRAV40A0A0B4J280 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 MIR378A-201ENST00000362177 66 ntBASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 Y_RNA.6-201ENST00000362350 114 ntBASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 SNORD115-3-201ENST00000363100 82 ntBASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 RNU6-1141P-201ENST00000364520 107 ntBASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 SNORA32.2-201ENST00000384049 122 ntBASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 U8.10-201ENST00000384260 133 ntBASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 Y_RNA.505-201ENST00000384489 102 ntBASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 SNORA46.1-201ENST00000391069 153 ntBASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 RNU2-63P-201ENST00000410792 194 ntBASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 RPL23AP36-201ENST00000413895 458 ntBASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 EDDM3CP-201ENST00000415977 425 ntBASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 AC009238.1-201ENST00000442165 424 ntBASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 AC009237.6-201ENST00000446969 424 ntBASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 AC082651.2-201ENST00000496833 166 ntBASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 AC021146.2-201ENST00000504736 556 ntBASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 MTND1P5-201ENST00000517906 940 ntBASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 MTND4LP26-201ENST00000518144 282 ntBASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 SCOCP1-201ENST00000554676 349 ntBASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 AC104581.2-201ENST00000572227 430 ntBASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 AL034555.1-201ENST00000604816 211 ntBASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 AL138726.1-201ENST00000614873 333 ntBASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 AC012640.5-201ENST00000623897 319 ntBASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 AC006026.1-201ENST00000444025 1803 ntBASIC1.35□□□□□ -2.19
TRAV40A0A0B4J280 Y_RNA.86-201ENST00000363020 111 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 Y_RNA.123-201ENST00000363338 102 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 Y_RNA.212-201ENST00000364177 102 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 RNU6-877P-201ENST00000383868 107 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 Y_RNA.473-201ENST00000384333 102 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 RNU6-306P-201ENST00000384617 107 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 SNORA67.5-201ENST00000391036 107 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 FGF7P8-201ENST00000402994 292 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 RNU6-1245P-201ENST00000411130 106 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 RNA5SP270-201ENST00000411361 118 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 AP000275.1-201ENST00000411943 390 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 FCF1P9-201ENST00000412546 282 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 Z82205.1-201ENST00000428456 297 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 AL133396.1-201ENST00000432048 687 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 NDUFA5P4-201ENST00000436704 385 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 AC124916.1-201ENST00000444020 547 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 AL139109.1-201ENST00000455491 297 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 RNU6-256P-201ENST00000516747 97 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 RNU6-1314P-201ENST00000517139 104 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 SNORA31.25-201ENST00000517242 134 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 AC034114.1-201ENST00000520293 285 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 DEFB131C-201ENST00000528817 165 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 SNORD53B-201ENST00000577887 78 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 MIR4255-201ENST00000579351 72 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 CPDP1-201ENST00000579660 283 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 MIR4303-201ENST00000581299 66 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 U4.5-201ENST00000617137 123 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.34□□□□□ -2.19
TRAV40A0A0B4J280 AC009541.1-201ENST00000438279 2662 ntBASIC1.34□□□□□ -2.2
TRAV40A0A0B4J280 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 RNU6-661P-201ENST00000362409 107 ntBASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 RNU6-1059P-201ENST00000363752 98 ntBASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 SNORD32B-201ENST00000364460 84 ntBASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 RNU6-546P-201ENST00000383991 107 ntBASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 Y_RNA.414-201ENST00000384011 101 ntBASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 SNORA12.2-201ENST00000391040 156 ntBASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 RNU4ATAC16P-201ENST00000408512 126 ntBASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 RNA5SP201-201ENST00000410316 124 ntBASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 RN7SKP158-201ENST00000410453 326 ntBASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 RN7SKP101-201ENST00000411376 320 ntBASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 GPM6BP3-201ENST00000442797 145 ntBASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 RNU6-1037P-201ENST00000459571 107 ntBASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 AC007547.1-201ENST00000462177 490 ntBASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 AC107032.1-201ENST00000485945 480 ntBASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 ATP5EP1-201ENST00000510257 156 ntBASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 RNU4-49P-201ENST00000516080 140 ntBASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 AP003033.1-201ENST00000527244 415 ntBASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 AC026371.1-201ENST00000551867 419 ntBASIC1.33□□□□□ -2.2
TRAV40A0A0B4J280 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.33□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms