Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 MIR515-2-201ENST00000384883 83 ntBASIC0.48□□□□□ -2.33
SCN3AQ9NY46 MIR515-1-201ENST00000384884 83 ntBASIC0.48□□□□□ -2.33
SCN3AQ9NY46 AL117342.1-201ENST00000404861 406 ntBASIC0.48□□□□□ -2.33
SCN3AQ9NY46 MTND3P17-201ENST00000416968 344 ntBASIC0.48□□□□□ -2.33
SCN3AQ9NY46 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC0.48□□□□□ -2.33
SCN3AQ9NY46 MTCO3P29-201ENST00000432119 779 ntBASIC0.48□□□□□ -2.33
SCN3AQ9NY46 AC090142.3-201ENST00000519012 385 ntBASIC0.48□□□□□ -2.33
SCN3AQ9NY46 AC087883.1-201ENST00000551882 391 ntBASIC0.48□□□□□ -2.33
SCN3AQ9NY46 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC0.48□□□□□ -2.33
SCN3AQ9NY46 PCMTD1P2-201ENST00000565017 355 ntBASIC0.48□□□□□ -2.33
SCN3AQ9NY46 AC008752.3-201ENST00000588113 712 ntBASIC0.48□□□□□ -2.33
SCN3AQ9NY46 SNRPGP20-201ENST00000604477 205 ntBASIC0.48□□□□□ -2.33
SCN3AQ9NY46 AC013244.3-201ENST00000605614 388 ntBASIC0.48□□□□□ -2.33
SCN3AQ9NY46 AL139286.2-201ENST00000606838 396 ntBASIC0.48□□□□□ -2.33
SCN3AQ9NY46 TCL6_2.1-201ENST00000615162 119 ntBASIC0.48□□□□□ -2.33
SCN3AQ9NY46 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC0.48□□□□□ -2.33
SCN3AQ9NY46 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.48□□□□□ -2.33
SCN3AQ9NY46 RNA5SP327-201ENST00000362494 101 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 Y_RNA.46-201ENST00000362695 102 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 RNU6-562P-201ENST00000362731 107 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.47□□□□□ -2.33
SCN3AQ9NY46 RPS27AP8-201ENST00000452665 445 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 USP9YP25-201ENST00000457708 443 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 AP000797.1-201ENST00000478870 387 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 RNA5SP330-201ENST00000517096 96 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 AC115990.1-201ENST00000526957 301 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 AL139022.2-201ENST00000606934 443 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 AC009509.4-201ENST00000619202 509 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 AC008133.2-201ENST00000624540 351 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 MIR340-201ENST00000362125 95 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 Y_RNA.251-201ENST00000364551 99 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 MIR578-201ENST00000384828 96 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.47□□□□□ -2.33
SCN3AQ9NY46 MRPL35P1-201ENST00000404272 572 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 AC114737.2-201ENST00000421583 173 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 AL031313.1-201ENST00000448435 256 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 MTND1P12-201ENST00000455231 147 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 AC048334.1-201ENST00000477975 159 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 RNU6-276P-201ENST00000516114 96 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 RNA5SP255-201ENST00000516370 107 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 MIR3118-1-201ENST00000581787 76 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 AC068790.6-201ENST00000602558 258 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 MTND3P19-201ENST00000603825 345 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 AC009994.1-201ENST00000606889 253 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 GHRLOS.1-201ENST00000610995 70 ntBASIC0.47□□□□□ -2.33
SCN3AQ9NY46 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
SCN3AQ9NY46 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC0.46□□□□□ -2.34
SCN3AQ9NY46 RNU6-378P-201ENST00000384324 107 ntBASIC0.46□□□□□ -2.34
SCN3AQ9NY46 MIR1283-1-201ENST00000408494 87 ntBASIC0.46□□□□□ -2.34
SCN3AQ9NY46 RNU6-387P-201ENST00000411331 105 ntBASIC0.46□□□□□ -2.34
SCN3AQ9NY46 MTCYBP39-201ENST00000437562 491 ntBASIC0.46□□□□□ -2.34
SCN3AQ9NY46 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.46□□□□□ -2.34
SCN3AQ9NY46 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC0.46□□□□□ -2.34
SCN3AQ9NY46 AL122001.1-201ENST00000457027 370 ntBASIC0.46□□□□□ -2.34
SCN3AQ9NY46 AL162395.1-201ENST00000457882 422 ntBASIC0.46□□□□□ -2.34
SCN3AQ9NY46 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.46□□□□□ -2.34
SCN3AQ9NY46 AC004817.2-201ENST00000561794 651 ntBASIC0.46□□□□□ -2.34
SCN3AQ9NY46 CYP4A27P-201ENST00000567218 190 ntBASIC0.46□□□□□ -2.34
SCN3AQ9NY46 AP002360.4-201ENST00000606980 481 ntBASIC0.46□□□□□ -2.34
SCN3AQ9NY46 AC104458.1-201ENST00000608243 463 ntBASIC0.46□□□□□ -2.34
SCN3AQ9NY46 PART1_2.1-201ENST00000612397 250 ntBASIC0.46□□□□□ -2.34
SCN3AQ9NY46 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.46□□□□□ -2.34
SCN3AQ9NY46 SNORD3E-202ENST00000627253 216 ntBASIC0.46□□□□□ -2.34
SCN3AQ9NY46 AC004808.1-201ENST00000627671 721 ntBASIC0.46□□□□□ -2.34
SCN3AQ9NY46 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC0.46□□□□□ -2.34
SCN3AQ9NY46 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.45□□□□□ -2.34
SCN3AQ9NY46 AL391994.1-201ENST00000254724 282 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.45□□□□□ -2.34
SCN3AQ9NY46 SNORD32A-201ENST00000364805 84 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 RNA5SP193-201ENST00000410353 107 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC0.45□□□□□ -2.34
SCN3AQ9NY46 RPS25P9-201ENST00000435591 252 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 RNA5SP481-201ENST00000516814 122 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 AC004812.1-201ENST00000540773 146 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 AC090888.2-201ENST00000559765 1144 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 MIR4711-201ENST00000578274 70 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 AC107304.1-201ENST00000604229 296 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 AC068787.1-201ENST00000623908 691 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC0.45□□□□□ -2.34
SCN3AQ9NY46 RNA5SP62-201ENST00000363457 110 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 Y_RNA.258-201ENST00000364613 105 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 RNU6-769P-201ENST00000384407 104 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 RNA5SP467-201ENST00000391274 118 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC0.45□□□□□ -2.34
SCN3AQ9NY46 AC019070.1-201ENST00000415008 1024 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 AC114491.1-201ENST00000416095 246 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 HIGD1AP15-201ENST00000416198 280 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 ELOCP4-201ENST00000420090 333 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC0.45□□□□□ -2.34
SCN3AQ9NY46 AC002486.1-201ENST00000435098 391 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.45□□□□□ -2.34
SCN3AQ9NY46 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC0.45□□□□□ -2.34
SCN3AQ9NY46 AC010486.2-201ENST00000505572 483 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 MTND3P25-201ENST00000509243 135 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC0.45□□□□□ -2.34
SCN3AQ9NY46 AC116347.2-201ENST00000514912 523 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 AC022878.1-201ENST00000530684 149 ntBASIC0.45□□□□□ -2.34
SCN3AQ9NY46 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC0.45□□□□□ -2.34
SCN3AQ9NY46 APOOP3-201ENST00000536787 586 ntBASIC0.45□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 201.7 ms