Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
TDP1Q9NUW8 Z75746.1-201ENST00000440243 2080 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.08□□□□□ -1.92
TDP1Q9NUW8 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.08□□□□□ -1.92
TDP1Q9NUW8 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
TDP1Q9NUW8 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
TDP1Q9NUW8 Y_RNA.27-201ENST00000362540 103 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 RNU6-655P-201ENST00000362858 107 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 RNU6-1210P-201ENST00000363775 107 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 RNU4-50P-201ENST00000364361 141 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 RNU6-26P-201ENST00000383985 107 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 Y_RNA.551-201ENST00000384661 102 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 RNU6-541P-201ENST00000384709 110 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 RNU1-139P-201ENST00000391307 165 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 AL512633.1-201ENST00000399931 655 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 AC097463.2-201ENST00000421074 142 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.08□□□□□ -1.92
TDP1Q9NUW8 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC3.08□□□□□ -1.92
TDP1Q9NUW8 RPL21P2-201ENST00000440049 481 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC3.08□□□□□ -1.92
TDP1Q9NUW8 MRPS35P2-201ENST00000508242 191 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.08□□□□□ -1.92
TDP1Q9NUW8 RNU6-1114P-201ENST00000516022 107 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 RNU1-143P-201ENST00000516296 146 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 RNU6-58P-201ENST00000517143 103 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 AC022868.1-201ENST00000517767 391 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 AC104027.1-201ENST00000521887 300 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 AC131281.1-201ENST00000522984 164 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 AP002770.2-201ENST00000543613 532 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 CYP4A27P-201ENST00000567218 190 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 MIR4765-201ENST00000585007 77 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 AL390123.1-201ENST00000603216 237 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 U1.23-201ENST00000610293 146 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 RNU1-68P-201ENST00000615382 146 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 DLEU2_2.2-201ENST00000615474 90 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 U1.39-201ENST00000621562 146 ntBASIC3.08□□□□□ -1.92
TDP1Q9NUW8 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
TDP1Q9NUW8 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.08□□□□□ -1.92
TDP1Q9NUW8 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.08□□□□□ -1.92
TDP1Q9NUW8 AC009487.2-201ENST00000420969 6821 ntBASIC3.07□□□□□ -1.92
TDP1Q9NUW8 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
TDP1Q9NUW8 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.07□□□□□ -1.92
TDP1Q9NUW8 SNORD115-8-201ENST00000363856 82 ntBASIC3.07□□□□□ -1.92
TDP1Q9NUW8 Y_RNA.210-201ENST00000364161 110 ntBASIC3.07□□□□□ -1.92
TDP1Q9NUW8 RNU4-56P-201ENST00000364700 142 ntBASIC3.07□□□□□ -1.92
TDP1Q9NUW8 SNORD115-38-201ENST00000365037 82 ntBASIC3.07□□□□□ -1.92
TDP1Q9NUW8 MIR568-201ENST00000385036 95 ntBASIC3.07□□□□□ -1.92
TDP1Q9NUW8 RNA5SP213-201ENST00000391031 106 ntBASIC3.07□□□□□ -1.92
TDP1Q9NUW8 EIF1P2-201ENST00000428233 350 ntBASIC3.07□□□□□ -1.92
TDP1Q9NUW8 MTCYBP9-201ENST00000431021 303 ntBASIC3.07□□□□□ -1.92
TDP1Q9NUW8 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.07□□□□□ -1.92
TDP1Q9NUW8 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.07□□□□□ -1.92
TDP1Q9NUW8 RPS29P12-201ENST00000460178 152 ntBASIC3.07□□□□□ -1.92
TDP1Q9NUW8 RPL23AP70-201ENST00000483361 460 ntBASIC3.07□□□□□ -1.92
TDP1Q9NUW8 RN7SL20P-201ENST00000488827 297 ntBASIC3.07□□□□□ -1.92
TDP1Q9NUW8 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC3.07□□□□□ -1.92
TDP1Q9NUW8 MTCO2P24-201ENST00000515611 426 ntBASIC3.07□□□□□ -1.92
TDP1Q9NUW8 RNA5SP356-201ENST00000515972 94 ntBASIC3.07□□□□□ -1.92
TDP1Q9NUW8 RNU2-53P-201ENST00000516257 147 ntBASIC3.07□□□□□ -1.92
TDP1Q9NUW8 RNU6-635P-201ENST00000516651 102 ntBASIC3.07□□□□□ -1.92
TDP1Q9NUW8 SCARNA11.3-201ENST00000517276 130 ntBASIC3.07□□□□□ -1.92
TDP1Q9NUW8 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.07□□□□□ -1.92
TDP1Q9NUW8 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.07□□□□□ -1.92
TDP1Q9NUW8 UBL5P4-201ENST00000562584 236 ntBASIC3.07□□□□□ -1.92
TDP1Q9NUW8 RPL12P50-201ENST00000603116 116 ntBASIC3.07□□□□□ -1.92
TDP1Q9NUW8 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.07□□□□□ -1.92
TDP1Q9NUW8 AC107294.3-201ENST00000609211 526 ntBASIC3.07□□□□□ -1.92
TDP1Q9NUW8 AC007318.2-201ENST00000620999 243 ntBASIC3.07□□□□□ -1.92
TDP1Q9NUW8 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
TDP1Q9NUW8 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.06□□□□□ -1.92
TDP1Q9NUW8 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.06□□□□□ -1.92
TDP1Q9NUW8 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.06□□□□□ -1.92
TDP1Q9NUW8 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
TDP1Q9NUW8 RNU1-76P-201ENST00000362903 159 ntBASIC3.06□□□□□ -1.92
TDP1Q9NUW8 RNU6-137P-201ENST00000363680 108 ntBASIC3.06□□□□□ -1.92
TDP1Q9NUW8 SNORA63.7-201ENST00000365579 123 ntBASIC3.06□□□□□ -1.92
TDP1Q9NUW8 RNY3P4-201ENST00000384428 101 ntBASIC3.06□□□□□ -1.92
TDP1Q9NUW8 RNU6-159P-201ENST00000391080 106 ntBASIC3.06□□□□□ -1.92
TDP1Q9NUW8 CBX3P9-201ENST00000402326 552 ntBASIC3.06□□□□□ -1.92
TDP1Q9NUW8 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
TDP1Q9NUW8 AL139281.1-201ENST00000422120 335 ntBASIC3.06□□□□□ -1.92
TDP1Q9NUW8 AL445305.1-201ENST00000432577 575 ntBASIC3.06□□□□□ -1.92
TDP1Q9NUW8 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC3.06□□□□□ -1.92
TDP1Q9NUW8 RPS15AP7-201ENST00000439294 405 ntBASIC3.06□□□□□ -1.92
TDP1Q9NUW8 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.06□□□□□ -1.92
TDP1Q9NUW8 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.06□□□□□ -1.92
TDP1Q9NUW8 AC010469.2-201ENST00000496412 480 ntBASIC3.06□□□□□ -1.92
TDP1Q9NUW8 RNA5SP112-201ENST00000515937 99 ntBASIC3.06□□□□□ -1.92
TDP1Q9NUW8 AC034114.1-201ENST00000520293 285 ntBASIC3.06□□□□□ -1.92
TDP1Q9NUW8 MIR3923-201ENST00000579521 83 ntBASIC3.06□□□□□ -1.92
TDP1Q9NUW8 RAC1P9-201ENST00000604990 392 ntBASIC3.06□□□□□ -1.92
TDP1Q9NUW8 AL138963.2-201ENST00000605137 226 ntBASIC3.06□□□□□ -1.92
TDP1Q9NUW8 PRR13P7-201ENST00000605538 430 ntBASIC3.06□□□□□ -1.92
TDP1Q9NUW8 AC005520.5-201ENST00000613926 164 ntBASIC3.06□□□□□ -1.92
TDP1Q9NUW8 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
TDP1Q9NUW8 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
TDP1Q9NUW8 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
TDP1Q9NUW8 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.05□□□□□ -1.92
TDP1Q9NUW8 OR56A5-201ENST00000340110 738 ntBASIC3.05□□□□□ -1.92
TDP1Q9NUW8 RNU4-15P-201ENST00000362613 141 ntBASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms