Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 AL355877.2-201ENST00000603670 358 ntBASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 AL133215.3-201ENST00000609801 448 ntBASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 AC084781.2-201ENST00000615568 161 ntBASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 HMGB1P24-202ENST00000615653 685 ntBASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 MIR3199-2-201ENST00000636243 86 ntBASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
UPF3AQ9H1J1 AC010889.1-201ENST00000566193 2666 ntBASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 AC073544.1-201ENST00000600110 1595 ntBASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 RNU6-1188P-201ENST00000363795 107 ntBASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 Y_RNA.238-201ENST00000364441 102 ntBASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 RNA5SP37-201ENST00000365420 130 ntBASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 Y_RNA.482-201ENST00000384377 111 ntBASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 SNORD116-20-201ENST00000384529 92 ntBASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 RNU6-601P-201ENST00000384540 107 ntBASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 MIR517A-201ENST00000385001 87 ntBASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 RNU6-750P-201ENST00000390946 107 ntBASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 AC007969.2-201ENST00000441891 191 ntBASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 SNORD5.1-201ENST00000458800 75 ntBASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 RNU6-377P-201ENST00000515965 102 ntBASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 RNU6-1016P-201ENST00000516689 94 ntBASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 Y_RNA.718-201ENST00000517110 102 ntBASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 AC109479.2-201ENST00000517842 174 ntBASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 CR383656.8-201ENST00000549046 145 ntBASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 AC018462.2-201ENST00000605375 395 ntBASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.24□□□□□ -2.05
UPF3AQ9H1J1 Y_RNA.140-201ENST00000363474 103 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 Y_RNA.338-201ENST00000365320 114 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 SNORA6-201ENST00000384033 151 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 RNU6-692P-201ENST00000384496 107 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 AL513475.1-201ENST00000406602 315 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 Y_RNA.594-201ENST00000410373 140 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 AC074117.2-201ENST00000417130 397 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 AL133396.1-201ENST00000432048 687 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 AC243964.1-201ENST00000441814 261 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 UBE2V1P7-201ENST00000446395 340 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 AL031659.1-201ENST00000447075 539 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 MTCO3P10-201ENST00000455912 772 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 AC107626.1-201ENST00000471084 183 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 MED28P2-201ENST00000475771 317 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 AC018437.1-201ENST00000492214 406 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 AK3P2-201ENST00000507976 429 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 AC121758.2-201ENST00000553271 193 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 MIR3616-201ENST00000584070 92 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 AL391813.1-201ENST00000603098 260 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 AP000654.2-201ENST00000605633 586 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 AC124303.1-201ENST00000605703 360 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 MIR3976-201ENST00000606807 139 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 RNU6ATAC35P-201ENST00000609276 444 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 KPNA2P1-201ENST00000458289 1591 ntBASIC2.23□□□□□ -2.05
UPF3AQ9H1J1 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 SNORD56.1-201ENST00000362913 68 ntBASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 SNORA68.1-201ENST00000364537 132 ntBASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 Y_RNA.259-201ENST00000364619 101 ntBASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 RNU6-622P-201ENST00000384272 103 ntBASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 RNU6-843P-201ENST00000384454 104 ntBASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 RNY4P36-201ENST00000391116 96 ntBASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 SNORA40.18-201ENST00000391200 128 ntBASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 RNU6-293P-201ENST00000411259 106 ntBASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 RNU7-152P-201ENST00000458982 64 ntBASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 RNU6-1037P-201ENST00000459571 107 ntBASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 RPL9P9-202ENST00000466501 579 ntBASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 RPL7P42-201ENST00000481005 679 ntBASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 AC005741.1-201ENST00000511094 432 ntBASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 AC091874.1-201ENST00000511402 339 ntBASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 SNORA31.6-201ENST00000516241 130 ntBASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 RNU6-1153P-201ENST00000516760 105 ntBASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 SNORD19.2-201ENST00000516978 73 ntBASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 AL133255.1-201ENST00000606374 441 ntBASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 AC009229.3-201ENST00000608056 282 ntBASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 AC245884.12-201ENST00000615364 59 ntBASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 AL669831.3-213ENST00000636676 183 ntBASIC2.22□□□□□ -2.05
UPF3AQ9H1J1 RBBP8P1-201ENST00000449447 1844 ntBASIC2.21□□□□□ -2.05
UPF3AQ9H1J1 Y_RNA.4-201ENST00000362333 112 ntBASIC2.21□□□□□ -2.06
UPF3AQ9H1J1 RNU6-1297P-201ENST00000384415 104 ntBASIC2.21□□□□□ -2.06
UPF3AQ9H1J1 RNU6-310P-201ENST00000384655 107 ntBASIC2.21□□□□□ -2.06
UPF3AQ9H1J1 AL133475.1-201ENST00000404414 305 ntBASIC2.21□□□□□ -2.06
UPF3AQ9H1J1 RNU6-1050P-201ENST00000410388 107 ntBASIC2.21□□□□□ -2.06
UPF3AQ9H1J1 Y_RNA.646-201ENST00000410980 101 ntBASIC2.21□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 152.6 ms