Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.09□□□□□ -2.07
NKX3-1Q99801 RNU6-120P-201ENST00000516077 103 ntBASIC2.09□□□□□ -2.07
NKX3-1Q99801 RNU6-559P-201ENST00000516151 98 ntBASIC2.09□□□□□ -2.07
NKX3-1Q99801 RNA5SP148-201ENST00000516527 94 ntBASIC2.09□□□□□ -2.07
NKX3-1Q99801 FGF7P1-201ENST00000582820 288 ntBASIC2.09□□□□□ -2.07
NKX3-1Q99801 MIR4273-201ENST00000582824 84 ntBASIC2.09□□□□□ -2.07
NKX3-1Q99801 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.09□□□□□ -2.07
NKX3-1Q99801 AC113139.1-201ENST00000605049 239 ntBASIC2.09□□□□□ -2.07
NKX3-1Q99801 RNU6ATAC35P-201ENST00000609276 444 ntBASIC2.09□□□□□ -2.07
NKX3-1Q99801 MIR5739-201ENST00000619803 80 ntBASIC2.09□□□□□ -2.07
NKX3-1Q99801 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.09□□□□□ -2.07
NKX3-1Q99801 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.09□□□□□ -2.07
NKX3-1Q99801 AC099654.5-201ENST00000636479 350 ntBASIC2.09□□□□□ -2.07
NKX3-1Q99801 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.09□□□□□ -2.08
NKX3-1Q99801 KPNA2P1-201ENST00000458289 1591 ntBASIC2.09□□□□□ -2.08
NKX3-1Q99801 AP000560.1-201ENST00000624150 1937 ntBASIC2.09□□□□□ -2.08
NKX3-1Q99801 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.08□□□□□ -2.08
NKX3-1Q99801 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
NKX3-1Q99801 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
NKX3-1Q99801 AC092268.1-201ENST00000342691 405 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 Y_RNA.2-201ENST00000362330 96 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 RNU4-82P-201ENST00000362443 140 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 Y_RNA.67-201ENST00000362870 100 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 RNU4-73P-201ENST00000363164 141 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 RNA5SP68-201ENST00000363885 119 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 SNORD114-30-201ENST00000364448 72 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 RNU6-1286P-201ENST00000383871 107 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 RNU6-142P-201ENST00000384019 107 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 RNU6-968P-201ENST00000384076 107 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 RNU6-378P-201ENST00000384324 107 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 MIR518C-201ENST00000384822 101 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 MIR549A-201ENST00000385268 96 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 HMGB3P2-201ENST00000411913 584 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC2.08□□□□□ -2.08
NKX3-1Q99801 AL513328.1-201ENST00000446460 224 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
NKX3-1Q99801 AC011753.1-201ENST00000451001 220 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 AC022447.4-201ENST00000504053 364 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 Y_RNA.708-201ENST00000516950 96 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 RNU6-586P-201ENST00000517265 104 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.08□□□□□ -2.08
NKX3-1Q99801 CBX3P8-201ENST00000532412 525 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.08□□□□□ -2.08
NKX3-1Q99801 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.08□□□□□ -2.08
NKX3-1Q99801 MIR4795-201ENST00000584182 89 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 AC010928.2-201ENST00000588017 287 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.08□□□□□ -2.08
NKX3-1Q99801 AL117336.2-201ENST00000602435 335 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 U4.3-201ENST00000621047 82 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 AL669831.3-213ENST00000636676 183 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 AC233981.2-201ENST00000611524 1614 ntBASIC2.08□□□□□ -2.08
NKX3-1Q99801 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
NKX3-1Q99801 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
NKX3-1Q99801 RNU6-1188P-201ENST00000363795 107 ntBASIC2.07□□□□□ -2.08
NKX3-1Q99801 RNA5SP456-201ENST00000364002 114 ntBASIC2.07□□□□□ -2.08
NKX3-1Q99801 RNU6-593P-201ENST00000364716 112 ntBASIC2.07□□□□□ -2.08
NKX3-1Q99801 RNU6-596P-201ENST00000365395 98 ntBASIC2.07□□□□□ -2.08
NKX3-1Q99801 SNORD116-29-201ENST00000384516 83 ntBASIC2.07□□□□□ -2.08
NKX3-1Q99801 SNORA41-201ENST00000384675 132 ntBASIC2.07□□□□□ -2.08
NKX3-1Q99801 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
NKX3-1Q99801 Y_RNA.597-201ENST00000410463 100 ntBASIC2.07□□□□□ -2.08
NKX3-1Q99801 Y_RNA.646-201ENST00000410980 101 ntBASIC2.07□□□□□ -2.08
NKX3-1Q99801 EIF1AXP1-201ENST00000419267 435 ntBASIC2.07□□□□□ -2.08
NKX3-1Q99801 AC012306.1-201ENST00000423267 114 ntBASIC2.07□□□□□ -2.08
NKX3-1Q99801 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.07□□□□□ -2.08
NKX3-1Q99801 AL161788.1-201ENST00000441805 169 ntBASIC2.07□□□□□ -2.08
NKX3-1Q99801 AL353705.4-201ENST00000449661 238 ntBASIC2.07□□□□□ -2.08
NKX3-1Q99801 AC008413.1-201ENST00000511864 177 ntBASIC2.07□□□□□ -2.08
NKX3-1Q99801 IGLV3-17-201ENST00000519099 244 ntBASIC2.07□□□□□ -2.08
NKX3-1Q99801 AC021231.3-201ENST00000558497 370 ntBASIC2.07□□□□□ -2.08
NKX3-1Q99801 MYL12BP1-201ENST00000569826 507 ntBASIC2.07□□□□□ -2.08
NKX3-1Q99801 MIR5696-201ENST00000578474 85 ntBASIC2.07□□□□□ -2.08
NKX3-1Q99801 MIR3136-201ENST00000583498 78 ntBASIC2.07□□□□□ -2.08
NKX3-1Q99801 AL355297.2-201ENST00000604792 129 ntBASIC2.07□□□□□ -2.08
NKX3-1Q99801 AL670379.2-201ENST00000604983 252 ntBASIC2.07□□□□□ -2.08
NKX3-1Q99801 AC098657.3-201ENST00000620434 263 ntBASIC2.07□□□□□ -2.08
NKX3-1Q99801 MTND5P9-201ENST00000503854 1755 ntBASIC2.07□□□□□ -2.08
NKX3-1Q99801 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.07□□□□□ -2.08
NKX3-1Q99801 RNU1-52P-201ENST00000384190 164 ntBASIC2.06□□□□□ -2.08
NKX3-1Q99801 RNU6-310P-201ENST00000384655 107 ntBASIC2.06□□□□□ -2.08
NKX3-1Q99801 MIR144-201ENST00000384886 86 ntBASIC2.06□□□□□ -2.08
NKX3-1Q99801 MIR95-201ENST00000385072 81 ntBASIC2.06□□□□□ -2.08
NKX3-1Q99801 NCOR1P3-201ENST00000420479 303 ntBASIC2.06□□□□□ -2.08
NKX3-1Q99801 EIF4EP2-201ENST00000422816 654 ntBASIC2.06□□□□□ -2.08
NKX3-1Q99801 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.06□□□□□ -2.08
NKX3-1Q99801 AL513124.1-201ENST00000450410 614 ntBASIC2.06□□□□□ -2.08
NKX3-1Q99801 MTCO3P10-201ENST00000455912 772 ntBASIC2.06□□□□□ -2.08
NKX3-1Q99801 Y_RNA.632-201ENST00000459189 102 ntBASIC2.06□□□□□ -2.08
NKX3-1Q99801 CKS1BP2-201ENST00000497342 240 ntBASIC2.06□□□□□ -2.08
NKX3-1Q99801 AC107222.1-201ENST00000510899 637 ntBASIC2.06□□□□□ -2.08
NKX3-1Q99801 MTND3P22-201ENST00000510932 243 ntBASIC2.06□□□□□ -2.08
NKX3-1Q99801 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.06□□□□□ -2.08
NKX3-1Q99801 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.06□□□□□ -2.08
NKX3-1Q99801 MIR449C-201ENST00000516047 92 ntBASIC2.06□□□□□ -2.08
NKX3-1Q99801 SCARNA16.2-201ENST00000516520 172 ntBASIC2.06□□□□□ -2.08
NKX3-1Q99801 RNU6-965P-201ENST00000516721 96 ntBASIC2.06□□□□□ -2.08
NKX3-1Q99801 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.06□□□□□ -2.08
NKX3-1Q99801 MIR3923-201ENST00000579521 83 ntBASIC2.06□□□□□ -2.08
NKX3-1Q99801 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.06□□□□□ -2.08
NKX3-1Q99801 AC005014.2-201ENST00000607795 599 ntBASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 147.7 ms