Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 SNORA5A-201ENST00000384111 134 ntBASIC4.41□□□□□ -1.7
TRERF1Q96PN7 BPY2DP-201ENST00000422208 265 ntBASIC4.41□□□□□ -1.7
TRERF1Q96PN7 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC4.41□□□□□ -1.7
TRERF1Q96PN7 Y_RNA.694-201ENST00000516677 117 ntBASIC4.41□□□□□ -1.7
TRERF1Q96PN7 RNU6-703P-201ENST00000516946 107 ntBASIC4.41□□□□□ -1.7
TRERF1Q96PN7 GNRHR2P1-201ENST00000555315 631 ntBASIC4.41□□□□□ -1.7
TRERF1Q96PN7 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC4.41□□□□□ -1.7
TRERF1Q96PN7 LINC00933-203ENST00000559812 219 ntBASIC4.41□□□□□ -1.7
TRERF1Q96PN7 MIR3921-201ENST00000577308 85 ntBASIC4.41□□□□□ -1.7
TRERF1Q96PN7 MIR3646-201ENST00000578301 84 ntBASIC4.41□□□□□ -1.7
TRERF1Q96PN7 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
TRERF1Q96PN7 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
TRERF1Q96PN7 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.41□□□□□ -1.7
TRERF1Q96PN7 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.41□□□□□ -1.7
TRERF1Q96PN7 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
TRERF1Q96PN7 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.7
TRERF1Q96PN7 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
TRERF1Q96PN7 Y_RNA.287-201ENST00000364853 94 ntBASIC4.4□□□□□ -1.71
TRERF1Q96PN7 SNORA72.4-201ENST00000384174 132 ntBASIC4.4□□□□□ -1.71
TRERF1Q96PN7 MIR199A2-201ENST00000385289 110 ntBASIC4.4□□□□□ -1.71
TRERF1Q96PN7 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
TRERF1Q96PN7 AIMP1P2-201ENST00000425294 312 ntBASIC4.4□□□□□ -1.71
TRERF1Q96PN7 YME1L1P1-201ENST00000429435 297 ntBASIC4.4□□□□□ -1.71
TRERF1Q96PN7 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC4.4□□□□□ -1.71
TRERF1Q96PN7 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.4□□□□□ -1.71
TRERF1Q96PN7 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC4.4□□□□□ -1.71
TRERF1Q96PN7 AC026403.1-201ENST00000518938 295 ntBASIC4.4□□□□□ -1.71
TRERF1Q96PN7 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC4.4□□□□□ -1.71
TRERF1Q96PN7 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC4.4□□□□□ -1.71
TRERF1Q96PN7 AC019159.1-201ENST00000605094 187 ntBASIC4.4□□□□□ -1.71
TRERF1Q96PN7 AL359198.2-201ENST00000611836 194 ntBASIC4.4□□□□□ -1.71
TRERF1Q96PN7 uc_338.32-201ENST00000615087 172 ntBASIC4.4□□□□□ -1.71
TRERF1Q96PN7 AL591926.4-201ENST00000616895 298 ntBASIC4.4□□□□□ -1.71
TRERF1Q96PN7 MESTIT1_1.1-201ENST00000618871 140 ntBASIC4.4□□□□□ -1.71
TRERF1Q96PN7 AC012640.5-201ENST00000623897 319 ntBASIC4.4□□□□□ -1.71
TRERF1Q96PN7 snoZ196.1-201ENST00000625269 89 ntBASIC4.4□□□□□ -1.71
TRERF1Q96PN7 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.4□□□□□ -1.71
TRERF1Q96PN7 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
TRERF1Q96PN7 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
TRERF1Q96PN7 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
TRERF1Q96PN7 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
TRERF1Q96PN7 MFSD8-236ENST00000641509 4050 ntBASIC4.4□□□□□ -1.71
TRERF1Q96PN7 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
TRERF1Q96PN7 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.4□□□□□ -1.71
TRERF1Q96PN7 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
TRERF1Q96PN7 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
TRERF1Q96PN7 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
TRERF1Q96PN7 RNA5SP475-201ENST00000410568 110 ntBASIC4.39□□□□□ -1.71
TRERF1Q96PN7 AC093578.1-201ENST00000415219 368 ntBASIC4.39□□□□□ -1.71
TRERF1Q96PN7 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC4.39□□□□□ -1.71
TRERF1Q96PN7 AL035423.1-201ENST00000420331 213 ntBASIC4.39□□□□□ -1.71
TRERF1Q96PN7 RNA5SP164-201ENST00000516533 110 ntBASIC4.39□□□□□ -1.71
TRERF1Q96PN7 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.39□□□□□ -1.71
TRERF1Q96PN7 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC4.39□□□□□ -1.71
TRERF1Q96PN7 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.39□□□□□ -1.71
TRERF1Q96PN7 TRAV28-201ENST00000557548 323 ntBASIC4.39□□□□□ -1.71
TRERF1Q96PN7 MIR5187-201ENST00000583479 76 ntBASIC4.39□□□□□ -1.71
TRERF1Q96PN7 AC006380.1-201ENST00000603598 186 ntBASIC4.39□□□□□ -1.71
TRERF1Q96PN7 U7.8-201ENST00000619968 63 ntBASIC4.39□□□□□ -1.71
TRERF1Q96PN7 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.39□□□□□ -1.71
TRERF1Q96PN7 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.39□□□□□ -1.71
TRERF1Q96PN7 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
TRERF1Q96PN7 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
TRERF1Q96PN7 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
TRERF1Q96PN7 MAPK10-372ENST00000641954 3413 ntBASIC4.39□□□□□ -1.71
TRERF1Q96PN7 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.38□□□□□ -1.71
TRERF1Q96PN7 RNA5SP119-201ENST00000362715 117 ntBASIC4.38□□□□□ -1.71
TRERF1Q96PN7 RNU6-1141P-201ENST00000364520 107 ntBASIC4.38□□□□□ -1.71
TRERF1Q96PN7 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
TRERF1Q96PN7 Y_RNA.521-201ENST00000384560 114 ntBASIC4.38□□□□□ -1.71
TRERF1Q96PN7 RN7SKP61-201ENST00000410642 295 ntBASIC4.38□□□□□ -1.71
TRERF1Q96PN7 Y_RNA.630-201ENST00000411370 108 ntBASIC4.38□□□□□ -1.71
TRERF1Q96PN7 AC009237.8-201ENST00000445492 379 ntBASIC4.38□□□□□ -1.71
TRERF1Q96PN7 HSPE1P13-201ENST00000451143 297 ntBASIC4.38□□□□□ -1.71
TRERF1Q96PN7 snoU13.22-201ENST00000459428 104 ntBASIC4.38□□□□□ -1.71
TRERF1Q96PN7 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC4.38□□□□□ -1.71
TRERF1Q96PN7 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.38□□□□□ -1.71
TRERF1Q96PN7 RNA5SP291-201ENST00000517222 105 ntBASIC4.38□□□□□ -1.71
TRERF1Q96PN7 NDUFA5P6-201ENST00000542110 379 ntBASIC4.38□□□□□ -1.71
TRERF1Q96PN7 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC4.38□□□□□ -1.71
TRERF1Q96PN7 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC4.38□□□□□ -1.71
TRERF1Q96PN7 AL391903.3-201ENST00000612158 163 ntBASIC4.38□□□□□ -1.71
TRERF1Q96PN7 UBE2Q2P6-201ENST00000612666 153 ntBASIC4.38□□□□□ -1.71
TRERF1Q96PN7 AC009093.8-201ENST00000641769 292 ntBASIC4.38□□□□□ -1.71
TRERF1Q96PN7 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
TRERF1Q96PN7 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
TRERF1Q96PN7 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.37□□□□□ -1.71
TRERF1Q96PN7 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
TRERF1Q96PN7 Y_RNA.369-201ENST00000365568 117 ntBASIC4.37□□□□□ -1.71
TRERF1Q96PN7 Y_RNA.393-201ENST00000383936 102 ntBASIC4.37□□□□□ -1.71
TRERF1Q96PN7 Y_RNA.495-201ENST00000384435 112 ntBASIC4.37□□□□□ -1.71
TRERF1Q96PN7 AL606845.1-201ENST00000404881 255 ntBASIC4.37□□□□□ -1.71
TRERF1Q96PN7 AL355497.1-201ENST00000406262 551 ntBASIC4.37□□□□□ -1.71
TRERF1Q96PN7 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.37□□□□□ -1.71
TRERF1Q96PN7 RPS26P42-201ENST00000413485 326 ntBASIC4.37□□□□□ -1.71
TRERF1Q96PN7 AC012306.1-201ENST00000423267 114 ntBASIC4.37□□□□□ -1.71
TRERF1Q96PN7 AL714022.1-201ENST00000439897 151 ntBASIC4.37□□□□□ -1.71
TRERF1Q96PN7 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC4.37□□□□□ -1.71
TRERF1Q96PN7 RNU7-170P-201ENST00000459303 61 ntBASIC4.37□□□□□ -1.71
TRERF1Q96PN7 RPL23AP70-201ENST00000483361 460 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms