Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC022709.1-201ENST00000615967 87 ntBASIC1.01□□□□□ -2.25
LMX1AQ8TE12 AL590240.4-201ENST00000616908 390 ntBASIC1.01□□□□□ -2.25
LMX1AQ8TE12 MIR6515-201ENST00000619843 57 ntBASIC1.01□□□□□ -2.25
LMX1AQ8TE12 AL391262.2-201ENST00000622466 494 ntBASIC1.01□□□□□ -2.25
LMX1AQ8TE12 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
LMX1AQ8TE12 SEPT14P19-203ENST00000633205 211 ntBASIC1.01□□□□□ -2.25
LMX1AQ8TE12 SNORD98-201ENST00000636377 67 ntBASIC1.01□□□□□ -2.25
LMX1AQ8TE12 U6.114-201ENST00000636407 96 ntBASIC1.01□□□□□ -2.25
LMX1AQ8TE12 AL450472.1-202ENST00000637286 180 ntBASIC1.01□□□□□ -2.25
LMX1AQ8TE12 LINC02555-201ENST00000563933 1951 ntBASIC1.01□□□□□ -2.25
LMX1AQ8TE12 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.01□□□□□ -2.25
LMX1AQ8TE12 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
LMX1AQ8TE12 RNU6-428P-201ENST00000362942 107 ntBASIC1□□□□□ -2.25
LMX1AQ8TE12 Y_RNA.112-201ENST00000363250 102 ntBASIC1□□□□□ -2.25
LMX1AQ8TE12 RNU4-48P-201ENST00000365559 182 ntBASIC1□□□□□ -2.25
LMX1AQ8TE12 RNU6-1127P-201ENST00000384580 107 ntBASIC1□□□□□ -2.25
LMX1AQ8TE12 RNU6-296P-201ENST00000384608 107 ntBASIC1□□□□□ -2.25
LMX1AQ8TE12 SNORA40.3-201ENST00000390964 122 ntBASIC1□□□□□ -2.25
LMX1AQ8TE12 SNORA16.2-201ENST00000390991 127 ntBASIC1□□□□□ -2.25
LMX1AQ8TE12 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1□□□□□ -2.25
LMX1AQ8TE12 AC244670.1-201ENST00000436879 112 ntBASIC1□□□□□ -2.25
LMX1AQ8TE12 ART2BP-201ENST00000453501 499 ntBASIC1□□□□□ -2.25
LMX1AQ8TE12 SNRPFP3-201ENST00000457792 225 ntBASIC1□□□□□ -2.25
LMX1AQ8TE12 RPL31P58-201ENST00000469001 379 ntBASIC1□□□□□ -2.25
LMX1AQ8TE12 AC079382.1-201ENST00000493346 557 ntBASIC1□□□□□ -2.25
LMX1AQ8TE12 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC1□□□□□ -2.25
LMX1AQ8TE12 MIR449C-201ENST00000516047 92 ntBASIC1□□□□□ -2.25
LMX1AQ8TE12 RNU2-69P-201ENST00000516061 100 ntBASIC1□□□□□ -2.25
LMX1AQ8TE12 RN7SKP287-201ENST00000516546 266 ntBASIC1□□□□□ -2.25
LMX1AQ8TE12 SNORA31.16-201ENST00000516773 139 ntBASIC1□□□□□ -2.25
LMX1AQ8TE12 SNORA31.17-201ENST00000516953 127 ntBASIC1□□□□□ -2.25
LMX1AQ8TE12 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC1□□□□□ -2.25
LMX1AQ8TE12 MTND1P24-201ENST00000552175 861 ntBASIC1□□□□□ -2.25
LMX1AQ8TE12 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC1□□□□□ -2.25
LMX1AQ8TE12 SNORA77B-201ENST00000578179 125 ntBASIC1□□□□□ -2.25
LMX1AQ8TE12 MIR3915-201ENST00000578518 97 ntBASIC1□□□□□ -2.25
LMX1AQ8TE12 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1□□□□□ -2.25
LMX1AQ8TE12 AL590229.1-201ENST00000603497 542 ntBASIC1□□□□□ -2.25
LMX1AQ8TE12 AC064872.1-201ENST00000604823 1072 ntBASIC1□□□□□ -2.25
LMX1AQ8TE12 AC006566.1-201ENST00000608943 513 ntBASIC1□□□□□ -2.25
LMX1AQ8TE12 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC1□□□□□ -2.25
LMX1AQ8TE12 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1□□□□□ -2.25
LMX1AQ8TE12 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
LMX1AQ8TE12 RNU6-112P-201ENST00000363599 104 ntBASIC0.99□□□□□ -2.25
LMX1AQ8TE12 Y_RNA.399-201ENST00000383955 105 ntBASIC0.99□□□□□ -2.25
LMX1AQ8TE12 RNU6-439P-201ENST00000384188 106 ntBASIC0.99□□□□□ -2.25
LMX1AQ8TE12 RNU6-393P-201ENST00000384475 107 ntBASIC0.99□□□□□ -2.25
LMX1AQ8TE12 MIR1285-1-201ENST00000408593 84 ntBASIC0.99□□□□□ -2.25
LMX1AQ8TE12 RNU6-1245P-201ENST00000411130 106 ntBASIC0.99□□□□□ -2.25
LMX1AQ8TE12 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC0.99□□□□□ -2.25
LMX1AQ8TE12 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC0.99□□□□□ -2.25
LMX1AQ8TE12 AC139712.2-201ENST00000424302 339 ntBASIC0.99□□□□□ -2.25
LMX1AQ8TE12 C8orf59P1-201ENST00000429930 303 ntBASIC0.99□□□□□ -2.25
LMX1AQ8TE12 RPL31P35-201ENST00000431058 377 ntBASIC0.99□□□□□ -2.25
LMX1AQ8TE12 RNA5SP269-201ENST00000459032 137 ntBASIC0.99□□□□□ -2.25
LMX1AQ8TE12 AC130509.1-201ENST00000464158 433 ntBASIC0.99□□□□□ -2.25
LMX1AQ8TE12 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC0.99□□□□□ -2.25
LMX1AQ8TE12 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC0.99□□□□□ -2.25
LMX1AQ8TE12 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC0.99□□□□□ -2.25
LMX1AQ8TE12 MTCO3P28-201ENST00000513351 515 ntBASIC0.99□□□□□ -2.25
LMX1AQ8TE12 RRN3P3-201ENST00000549207 578 ntBASIC0.99□□□□□ -2.25
LMX1AQ8TE12 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC0.99□□□□□ -2.25
LMX1AQ8TE12 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC0.99□□□□□ -2.25
LMX1AQ8TE12 AC012414.6-201ENST00000568241 401 ntBASIC0.99□□□□□ -2.25
LMX1AQ8TE12 MIR4703-201ENST00000577728 79 ntBASIC0.99□□□□□ -2.25
LMX1AQ8TE12 AC245014.2-201ENST00000603689 287 ntBASIC0.99□□□□□ -2.25
LMX1AQ8TE12 AC093424.1-201ENST00000604999 338 ntBASIC0.99□□□□□ -2.25
LMX1AQ8TE12 AC246785.4-201ENST00000605374 287 ntBASIC0.99□□□□□ -2.25
LMX1AQ8TE12 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
LMX1AQ8TE12 AC008250.2-201ENST00000615261 205 ntBASIC0.99□□□□□ -2.25
LMX1AQ8TE12 AC130454.1-201ENST00000622948 401 ntBASIC0.99□□□□□ -2.25
LMX1AQ8TE12 AC068205.3-201ENST00000636385 468 ntBASIC0.99□□□□□ -2.25
LMX1AQ8TE12 ANKRD20A17P-201ENST00000511745 1330 ntBASIC0.98□□□□□ -2.25
LMX1AQ8TE12 MIR302D-201ENST00000362275 68 ntBASIC0.98□□□□□ -2.25
LMX1AQ8TE12 RNU6-434P-201ENST00000384376 107 ntBASIC0.98□□□□□ -2.25
LMX1AQ8TE12 RNU6-606P-201ENST00000384721 111 ntBASIC0.98□□□□□ -2.25
LMX1AQ8TE12 SNORA12.2-201ENST00000391040 156 ntBASIC0.98□□□□□ -2.25
LMX1AQ8TE12 MTND2P18-201ENST00000419962 1030 ntBASIC0.98□□□□□ -2.25
LMX1AQ8TE12 PIGFP2-201ENST00000421400 651 ntBASIC0.98□□□□□ -2.25
LMX1AQ8TE12 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC0.98□□□□□ -2.25
LMX1AQ8TE12 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC0.98□□□□□ -2.25
LMX1AQ8TE12 AL445567.1-201ENST00000439121 144 ntBASIC0.98□□□□□ -2.25
LMX1AQ8TE12 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC0.98□□□□□ -2.25
LMX1AQ8TE12 ZNF736P8Y-201ENST00000451913 669 ntBASIC0.98□□□□□ -2.25
LMX1AQ8TE12 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.98□□□□□ -2.25
LMX1AQ8TE12 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC0.98□□□□□ -2.25
LMX1AQ8TE12 AC079140.5-201ENST00000507882 310 ntBASIC0.98□□□□□ -2.25
LMX1AQ8TE12 AC005741.1-201ENST00000511094 432 ntBASIC0.98□□□□□ -2.25
LMX1AQ8TE12 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC0.98□□□□□ -2.25
LMX1AQ8TE12 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.98□□□□□ -2.25
LMX1AQ8TE12 RNA5SP503-201ENST00000517047 117 ntBASIC0.98□□□□□ -2.25
LMX1AQ8TE12 AP001893.2-201ENST00000526949 202 ntBASIC0.98□□□□□ -2.25
LMX1AQ8TE12 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC0.98□□□□□ -2.25
LMX1AQ8TE12 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.98□□□□□ -2.25
LMX1AQ8TE12 AC005668.1-201ENST00000571142 476 ntBASIC0.98□□□□□ -2.25
LMX1AQ8TE12 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC0.98□□□□□ -2.25
LMX1AQ8TE12 AC012507.3-201ENST00000603556 477 ntBASIC0.98□□□□□ -2.25
LMX1AQ8TE12 MIR98-201ENST00000606724 119 ntBASIC0.98□□□□□ -2.25
LMX1AQ8TE12 PCGEM1.1-201ENST00000613431 131 ntBASIC0.98□□□□□ -2.25
LMX1AQ8TE12 AC005520.5-201ENST00000613926 164 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 180.3 ms