Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC063943.3-201ENST00000615562 356 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 AC002553.4-201ENST00000616896 331 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 Y_RNA.453-201ENST00000384223 109 ntBASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 RNU4-46P-201ENST00000410818 138 ntBASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 RNU6-607P-201ENST00000411283 108 ntBASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 CYCSP33-201ENST00000414485 327 ntBASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 SNRPEP10-201ENST00000420249 274 ntBASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 AL445646.1-201ENST00000431784 216 ntBASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 MTND3P16-201ENST00000452205 344 ntBASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 RNU7-66P-201ENST00000459469 62 ntBASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 RPL38P4-201ENST00000502376 214 ntBASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 AC074344.1-201ENST00000512823 224 ntBASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 RNU2-69P-201ENST00000516061 100 ntBASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 Y_RNA.665-201ENST00000516177 98 ntBASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 RNU6-1038P-201ENST00000516516 104 ntBASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 RNU6-548P-201ENST00000517083 115 ntBASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 AL137161.1-201ENST00000532231 390 ntBASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 AC090115.3-201ENST00000553218 849 ntBASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 AP001094.1-201ENST00000579805 193 ntBASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 AC018889.1-201ENST00000605372 397 ntBASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 MIR1248-201ENST00000629190 106 ntBASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 U6.114-201ENST00000636407 96 ntBASIC1.78□□□□□ -2.12
ZNF540Q8NDQ6 ZNF72P-201ENST00000425869 1908 ntBASIC1.78□□□□□ -2.13
ZNF540Q8NDQ6 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 RNU6-1287P-201ENST00000362914 107 ntBASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 Y_RNA.231-201ENST00000364358 102 ntBASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 Y_RNA.378-201ENST00000365652 113 ntBASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 SNORA67.3-201ENST00000384366 140 ntBASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 RNU6-1060P-201ENST00000384664 107 ntBASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 MIR544A-201ENST00000384855 91 ntBASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 FGF7P8-201ENST00000402994 292 ntBASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 MIR1289-2-201ENST00000408360 111 ntBASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 AL139156.1-201ENST00000412785 841 ntBASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 MTCO2P30-201ENST00000503662 364 ntBASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 AC116353.2-201ENST00000505332 712 ntBASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 MTND3P25-201ENST00000509243 135 ntBASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 RNA5SP182-201ENST00000516064 82 ntBASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 RNU6-358P-201ENST00000516564 75 ntBASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 MIR5089-201ENST00000580047 84 ntBASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 MIR3136-201ENST00000583498 78 ntBASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 AC060780.3-201ENST00000589464 80 ntBASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 RNU6-89P-201ENST00000606519 100 ntBASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 U4.7-201ENST00000638126 106 ntBASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 OR4G1P-203ENST00000641984 1631 ntBASIC1.77□□□□□ -2.13
ZNF540Q8NDQ6 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 RNY3P14-201ENST00000384309 102 ntBASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 Y_RNA.615-201ENST00000410769 117 ntBASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 EIF1AXP1-201ENST00000419267 435 ntBASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 HMGB1P18-201ENST00000438801 619 ntBASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 SCARNA18-201ENST00000459004 134 ntBASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 NAF1-205ENST00000509434 385 ntTSL 3 BASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 RNU5F-2P-201ENST00000516066 82 ntBASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 SNORD60.2-201ENST00000516883 86 ntBASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 SNORA25.17-201ENST00000517184 124 ntBASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 AC134698.4-201ENST00000523451 826 ntBASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 AC005786.1-201ENST00000588553 154 ntBASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 CTHRC1P1-201ENST00000605383 469 ntBASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 DISC2.1-201ENST00000612827 205 ntBASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 uc_338.34-201ENST00000617467 174 ntBASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 uc_338.11-201ENST00000619132 160 ntBASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 AC006504.8-201ENST00000621046 635 ntBASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 AC090617.10-201ENST00000624308 134 ntBASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 Z69720.2-201ENST00000624755 279 ntBASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 MIR3662-201ENST00000637030 95 ntBASIC1.76□□□□□ -2.13
ZNF540Q8NDQ6 MIR126-201ENST00000362291 85 ntBASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 RNU4-56P-201ENST00000364700 142 ntBASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 Y_RNA.399-201ENST00000383955 105 ntBASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 RNU6-45P-201ENST00000384471 107 ntBASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 SNORD70.1-201ENST00000391007 85 ntBASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 SNORA26.9-201ENST00000391322 122 ntBASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 SNRPFP3-201ENST00000457792 225 ntBASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 RNU6-1208P-201ENST00000459588 107 ntBASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms