Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RNU6-581P-201ENST00000516214 105 ntBASIC3.12□□□□□ -1.91
VPS53Q5VIR6 AC022616.4-201ENST00000522985 181 ntBASIC3.12□□□□□ -1.91
VPS53Q5VIR6 AC104581.2-201ENST00000572227 430 ntBASIC3.12□□□□□ -1.91
VPS53Q5VIR6 AC009163.5-201ENST00000575421 637 ntBASIC3.12□□□□□ -1.91
VPS53Q5VIR6 AC060766.3-201ENST00000591442 263 ntBASIC3.12□□□□□ -1.91
VPS53Q5VIR6 uc_338.14-201ENST00000613162 166 ntBASIC3.12□□□□□ -1.91
VPS53Q5VIR6 AC097372.5-201ENST00000623665 376 ntBASIC3.12□□□□□ -1.91
VPS53Q5VIR6 MIR3529-201ENST00000637713 78 ntBASIC3.12□□□□□ -1.91
VPS53Q5VIR6 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.12□□□□□ -1.91
VPS53Q5VIR6 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
VPS53Q5VIR6 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
VPS53Q5VIR6 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS53Q5VIR6 AGL-204ENST00000370161 6923 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS53Q5VIR6 RNU6-461P-201ENST00000364195 107 ntBASIC3.11□□□□□ -1.91
VPS53Q5VIR6 Y_RNA.380-201ENST00000365663 111 ntBASIC3.11□□□□□ -1.91
VPS53Q5VIR6 Y_RNA.389-201ENST00000383924 113 ntBASIC3.11□□□□□ -1.91
VPS53Q5VIR6 MIR196B-201ENST00000384852 84 ntBASIC3.11□□□□□ -1.91
VPS53Q5VIR6 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
VPS53Q5VIR6 RNU6-823P-201ENST00000391042 103 ntBASIC3.11□□□□□ -1.91
VPS53Q5VIR6 RNU6-101P-201ENST00000410323 104 ntBASIC3.11□□□□□ -1.91
VPS53Q5VIR6 RNA5SP184-201ENST00000411071 108 ntBASIC3.11□□□□□ -1.91
VPS53Q5VIR6 HMGB3P2-201ENST00000411913 584 ntBASIC3.11□□□□□ -1.91
VPS53Q5VIR6 EIF1AXP1-201ENST00000419267 435 ntBASIC3.11□□□□□ -1.91
VPS53Q5VIR6 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS53Q5VIR6 CHEK2P4-201ENST00000450340 246 ntBASIC3.11□□□□□ -1.91
VPS53Q5VIR6 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS53Q5VIR6 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS53Q5VIR6 RNU6-911P-201ENST00000516523 104 ntBASIC3.11□□□□□ -1.91
VPS53Q5VIR6 RN7SKP40-201ENST00000517211 242 ntBASIC3.11□□□□□ -1.91
VPS53Q5VIR6 SNORA31.23-201ENST00000517219 133 ntBASIC3.11□□□□□ -1.91
VPS53Q5VIR6 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS53Q5VIR6 HSBP1P1-201ENST00000555205 166 ntBASIC3.11□□□□□ -1.91
VPS53Q5VIR6 7SK.7-201ENST00000603504 247 ntBASIC3.11□□□□□ -1.91
VPS53Q5VIR6 Z98751.3-201ENST00000604447 521 ntBASIC3.11□□□□□ -1.91
VPS53Q5VIR6 AL359198.2-201ENST00000611836 194 ntBASIC3.11□□□□□ -1.91
VPS53Q5VIR6 MIR1244-1-201ENST00000612829 85 ntBASIC3.11□□□□□ -1.91
VPS53Q5VIR6 7SK.10-201ENST00000621414 298 ntBASIC3.11□□□□□ -1.91
VPS53Q5VIR6 MIR1244-3-201ENST00000635744 85 ntBASIC3.11□□□□□ -1.91
VPS53Q5VIR6 MIR1244-2-201ENST00000636449 85 ntBASIC3.11□□□□□ -1.91
VPS53Q5VIR6 MIR1244-4-202ENST00000636813 85 ntBASIC3.11□□□□□ -1.91
VPS53Q5VIR6 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.11□□□□□ -1.91
VPS53Q5VIR6 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
VPS53Q5VIR6 AC009541.1-201ENST00000438279 2662 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS53Q5VIR6 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS53Q5VIR6 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS53Q5VIR6 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
VPS53Q5VIR6 RNU6-858P-201ENST00000362436 107 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 SNORD56.1-201ENST00000362913 68 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 Y_RNA.111-201ENST00000363248 100 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 SNORD32A-201ENST00000364805 84 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 RNU6-487P-201ENST00000365430 104 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 Y_RNA.424-201ENST00000384063 103 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 Y_RNA.485-201ENST00000384395 102 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 RNU6-843P-201ENST00000384454 104 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 RNU6-748P-201ENST00000384648 107 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 Y_RNA.557-201ENST00000384680 107 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 RNA5SP494-201ENST00000410653 129 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 RNA5SP492-201ENST00000411330 114 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 RPL23AP95-201ENST00000426806 265 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 AC096644.2-201ENST00000429278 159 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 AC092423.1-201ENST00000430165 186 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS53Q5VIR6 AL031659.1-201ENST00000447075 539 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS53Q5VIR6 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS53Q5VIR6 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC3.1□□□□□ -1.91
VPS53Q5VIR6 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS53Q5VIR6 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.1□□□□□ -1.91
VPS53Q5VIR6 MTCO2P24-201ENST00000515611 426 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 RNA5SP282-201ENST00000516355 108 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 ACA59.2-201ENST00000517061 156 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 CKS1BP7-201ENST00000522230 235 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 MIR4672-201ENST00000583126 81 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 MIR5188-201ENST00000583467 113 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 VN1R91P-201ENST00000594377 169 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 PRR13P7-201ENST00000605538 430 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 AC087588.2-201ENST00000617667 426 ntBASIC3.1□□□□□ -1.91
VPS53Q5VIR6 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
VPS53Q5VIR6 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
VPS53Q5VIR6 Y_RNA.153-201ENST00000363615 91 ntBASIC3.09□□□□□ -1.91
VPS53Q5VIR6 SNORD14.1-201ENST00000365609 90 ntBASIC3.09□□□□□ -1.91
VPS53Q5VIR6 Y_RNA.526-201ENST00000384572 110 ntBASIC3.09□□□□□ -1.91
VPS53Q5VIR6 Y_RNA.605-201ENST00000410577 105 ntBASIC3.09□□□□□ -1.91
VPS53Q5VIR6 MTCYBP9-201ENST00000431021 303 ntBASIC3.09□□□□□ -1.91
VPS53Q5VIR6 RPS3P1-201ENST00000456781 192 ntBASIC3.09□□□□□ -1.91
VPS53Q5VIR6 AC016256.1-201ENST00000547971 354 ntBASIC3.09□□□□□ -1.91
VPS53Q5VIR6 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.09□□□□□ -1.91
VPS53Q5VIR6 AL132822.1-201ENST00000617063 513 ntBASIC3.09□□□□□ -1.91
VPS53Q5VIR6 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS53Q5VIR6 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
VPS53Q5VIR6 Y_RNA.149-201ENST00000363558 117 ntBASIC3.08□□□□□ -1.92
VPS53Q5VIR6 RNU4-9P-201ENST00000364951 139 ntBASIC3.08□□□□□ -1.92
VPS53Q5VIR6 RNU6-196P-201ENST00000384315 107 ntBASIC3.08□□□□□ -1.92
VPS53Q5VIR6 SNORA12.2-201ENST00000391040 156 ntBASIC3.08□□□□□ -1.92
VPS53Q5VIR6 MIR190B-201ENST00000401119 79 ntBASIC3.08□□□□□ -1.92
VPS53Q5VIR6 RNA5SP390-201ENST00000410191 113 ntBASIC3.08□□□□□ -1.92
VPS53Q5VIR6 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.08□□□□□ -1.92
VPS53Q5VIR6 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms