Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC0.65□□□□□ -2.3
CCDC88AQ3V6T2 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.65□□□□□ -2.31
CCDC88AQ3V6T2 Y_RNA.46-201ENST00000362695 102 ntBASIC0.65□□□□□ -2.31
CCDC88AQ3V6T2 RNU6-1179P-201ENST00000384667 107 ntBASIC0.65□□□□□ -2.31
CCDC88AQ3V6T2 MIR10A-201ENST00000385043 110 ntBASIC0.65□□□□□ -2.31
CCDC88AQ3V6T2 RPS29P13-201ENST00000402041 169 ntBASIC0.65□□□□□ -2.31
CCDC88AQ3V6T2 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC0.65□□□□□ -2.31
CCDC88AQ3V6T2 AL589872.1-201ENST00000426602 288 ntBASIC0.65□□□□□ -2.31
CCDC88AQ3V6T2 AC074344.1-201ENST00000512823 224 ntBASIC0.65□□□□□ -2.31
CCDC88AQ3V6T2 RNU1-86P-201ENST00000516108 154 ntBASIC0.65□□□□□ -2.31
CCDC88AQ3V6T2 RNU1-107P-201ENST00000516617 154 ntBASIC0.65□□□□□ -2.31
CCDC88AQ3V6T2 RNA5SP437-201ENST00000517249 129 ntBASIC0.65□□□□□ -2.31
CCDC88AQ3V6T2 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC0.65□□□□□ -2.31
CCDC88AQ3V6T2 DEFB131E-202ENST00000602581 683 ntBASIC0.65□□□□□ -2.31
CCDC88AQ3V6T2 AC068205.3-201ENST00000636385 468 ntBASIC0.65□□□□□ -2.31
CCDC88AQ3V6T2 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
CCDC88AQ3V6T2 RNU6-562P-201ENST00000362731 107 ntBASIC0.64□□□□□ -2.31
CCDC88AQ3V6T2 SNORD31B-201ENST00000364977 69 ntBASIC0.64□□□□□ -2.31
CCDC88AQ3V6T2 AC019070.1-201ENST00000415008 1024 ntBASIC0.64□□□□□ -2.31
CCDC88AQ3V6T2 ZNF736P1Y-201ENST00000440402 1276 ntBASIC0.64□□□□□ -2.31
CCDC88AQ3V6T2 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC0.64□□□□□ -2.31
CCDC88AQ3V6T2 PGBD4P5-201ENST00000445958 426 ntBASIC0.64□□□□□ -2.31
CCDC88AQ3V6T2 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.64□□□□□ -2.31
CCDC88AQ3V6T2 AC079140.5-201ENST00000507882 310 ntBASIC0.64□□□□□ -2.31
CCDC88AQ3V6T2 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC0.64□□□□□ -2.31
CCDC88AQ3V6T2 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC0.64□□□□□ -2.31
CCDC88AQ3V6T2 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC0.64□□□□□ -2.31
CCDC88AQ3V6T2 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC0.64□□□□□ -2.31
CCDC88AQ3V6T2 HMGB1P33-201ENST00000563485 527 ntBASIC0.64□□□□□ -2.31
CCDC88AQ3V6T2 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC0.64□□□□□ -2.31
CCDC88AQ3V6T2 AC091489.2-201ENST00000566263 604 ntBASIC0.64□□□□□ -2.31
CCDC88AQ3V6T2 MIR3976-201ENST00000606807 139 ntBASIC0.64□□□□□ -2.31
CCDC88AQ3V6T2 MTND4P12-201ENST00000498999 1377 ntBASIC0.64□□□□□ -2.31
CCDC88AQ3V6T2 AC092268.1-201ENST00000342691 405 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 RNU6-743P-201ENST00000364151 106 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 RNU6-906P-201ENST00000384700 70 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 SNORA26.3-201ENST00000391119 136 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 RNA5SP127-201ENST00000411051 133 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 CDK8P2-201ENST00000415020 547 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 AL606490.4-201ENST00000423117 127 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 RAB28P5-201ENST00000427490 651 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 AL122001.1-201ENST00000457027 370 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 AP000797.1-201ENST00000478870 387 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 AC097473.1-201ENST00000508142 408 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 RNU5F-4P-201ENST00000516581 114 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 AC013828.2-201ENST00000532487 235 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 MIR4661-201ENST00000582720 75 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 MIR4307-201ENST00000582802 84 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 AC026585.1-201ENST00000619582 524 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 RNU6-212P-201ENST00000362642 104 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 RNU6-25P-201ENST00000383873 107 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 RNU6-48P-201ENST00000384161 107 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 RNU6-15P-201ENST00000384534 107 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 RNU6-29P-201ENST00000384637 107 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 MIR200A-201ENST00000384875 90 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 RNU6-1000P-201ENST00000391066 106 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 HIGD1AP15-201ENST00000416198 280 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 AC098934.3-201ENST00000430450 190 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 SNAP23P1-201ENST00000433229 246 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 MTND3P1-201ENST00000441336 220 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 AL360271.2-201ENST00000447710 161 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 MTND3P25-201ENST00000509243 135 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 AC104136.1-201ENST00000512969 394 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 SNORA19.3-201ENST00000516165 130 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 RNU6-567P-201ENST00000516746 107 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 RNA5SP481-201ENST00000516814 122 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 RN7SKP88-201ENST00000516847 250 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 CYP3A52P-201ENST00000563326 91 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 AC005771.1-201ENST00000585581 349 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 BCRP9-201ENST00000605312 388 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 AL022345.2-201ENST00000606307 135 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 AC009994.1-201ENST00000606889 253 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 7SK.8-201ENST00000612110 250 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 7SK.11-201ENST00000615477 250 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 7SK.13-201ENST00000622040 250 ntBASIC0.63□□□□□ -2.31
CCDC88AQ3V6T2 RNU6-1200P-201ENST00000384162 107 ntBASIC0.62□□□□□ -2.31
CCDC88AQ3V6T2 RNU6-378P-201ENST00000384324 107 ntBASIC0.62□□□□□ -2.31
CCDC88AQ3V6T2 SNORA12.2-201ENST00000391040 156 ntBASIC0.62□□□□□ -2.31
CCDC88AQ3V6T2 AC060773.1-201ENST00000421698 310 ntBASIC0.62□□□□□ -2.31
CCDC88AQ3V6T2 RPS27AP14-201ENST00000422868 454 ntBASIC0.62□□□□□ -2.31
CCDC88AQ3V6T2 AL117351.1-201ENST00000438864 766 ntBASIC0.62□□□□□ -2.31
CCDC88AQ3V6T2 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC0.62□□□□□ -2.31
CCDC88AQ3V6T2 SCARNA16.2-201ENST00000516520 172 ntBASIC0.62□□□□□ -2.31
CCDC88AQ3V6T2 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
CCDC88AQ3V6T2 AC090888.2-201ENST00000559765 1144 ntBASIC0.62□□□□□ -2.31
CCDC88AQ3V6T2 CYP4A27P-201ENST00000567218 190 ntBASIC0.62□□□□□ -2.31
CCDC88AQ3V6T2 AC002400.1-201ENST00000569310 726 ntBASIC0.62□□□□□ -2.31
CCDC88AQ3V6T2 AC010620.1-201ENST00000601088 1102 ntBASIC0.62□□□□□ -2.31
CCDC88AQ3V6T2 AC091965.4-201ENST00000607691 587 ntBASIC0.62□□□□□ -2.31
CCDC88AQ3V6T2 AC011155.2-201ENST00000623202 216 ntBASIC0.62□□□□□ -2.31
CCDC88AQ3V6T2 UGP2-231ENST00000627474 264 ntTSL 5 BASIC0.62□□□□□ -2.31
CCDC88AQ3V6T2 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC0.62□□□□□ -2.31
CCDC88AQ3V6T2 AC002486.1-201ENST00000435098 391 ntBASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms