Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 OR5T3-201ENST00000303059 1023 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 RNU6-796P-201ENST00000391086 107 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 ZNF736P10Y-201ENST00000403990 1110 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 FCF1P10-201ENST00000407590 479 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 RNA5SP100-201ENST00000410903 110 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 RNA5SP59-201ENST00000410922 110 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC0.03□□□□□ -2.4
COL7A1Q02388 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC0.03□□□□□ -2.4
COL7A1Q02388 RAC1P8-201ENST00000427086 527 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC0.03□□□□□ -2.4
COL7A1Q02388 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC0.03□□□□□ -2.4
COL7A1Q02388 ZNF886P-201ENST00000450781 723 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 MTND2P24-201ENST00000453434 806 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AL441985.1-201ENST00000457727 251 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC0.03□□□□□ -2.4
COL7A1Q02388 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC0.03□□□□□ -2.4
COL7A1Q02388 HMGN1P13-201ENST00000505795 138 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 RNU6-475P-201ENST00000516073 104 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 RNU6-390P-201ENST00000516259 103 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 RNU4-54P-201ENST00000516428 129 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 RNA5SP461-201ENST00000516451 104 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 5S_rRNA.3-201ENST00000517021 110 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AC091163.3-201ENST00000518269 1144 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC0.03□□□□□ -2.4
COL7A1Q02388 RPL23AP91-201ENST00000569211 455 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 MIR4709-201ENST00000577272 72 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AL117336.2-201ENST00000602435 335 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AC004492.1-201ENST00000607036 742 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 MIR15A-201ENST00000607334 83 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AC091965.4-201ENST00000607691 587 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 5S_rRNA.19-201ENST00000612131 110 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AC021506.2-201ENST00000612354 169 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AL359547.2-201ENST00000615810 418 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.03□□□□□ -2.4
COL7A1Q02388 5S_rRNA.18-201ENST00000621941 110 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AC097460.3-201ENST00000623099 442 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AC120349.3-201ENST00000624377 529 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 MTND2P41-201ENST00000637599 773 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 MIR3529-201ENST00000637713 78 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 U6.108-201ENST00000637764 58 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 U4.7-201ENST00000638126 106 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 MTND4P5-201ENST00000435821 1374 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 RNU6-839P-201ENST00000363347 108 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 U3.9-201ENST00000363823 204 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 Y_RNA.246-201ENST00000364495 108 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 SNORD113.3-201ENST00000364630 78 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 Y_RNA.363-201ENST00000365529 113 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 SNORD116-13-201ENST00000384408 92 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 Y_RNA.534-201ENST00000384599 112 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 MIR558-201ENST00000384920 94 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 MIR549A-201ENST00000385268 96 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 SNORD12-201ENST00000391002 90 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 SNORA12.2-201ENST00000391040 156 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 Y_RNA.623-201ENST00000411128 95 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 CDK8P2-201ENST00000415020 547 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AL158050.1-201ENST00000416077 457 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 USP9YP21-201ENST00000420603 432 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC0.03□□□□□ -2.4
COL7A1Q02388 AC139712.2-201ENST00000424302 339 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 BX119904.4-201ENST00000424402 301 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC0.03□□□□□ -2.4
COL7A1Q02388 AL627311.1-201ENST00000431514 115 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC0.03□□□□□ -2.4
COL7A1Q02388 BRK1P2-201ENST00000442875 223 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.03□□□□□ -2.4
COL7A1Q02388 AL592447.1-201ENST00000447592 540 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 ZNF736P5Y-201ENST00000451173 805 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AC244505.3-201ENST00000454598 187 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 snoU13.30-201ENST00000458951 104 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 RNU6-1037P-201ENST00000459571 107 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.03□□□□□ -2.4
COL7A1Q02388 AC027338.1-201ENST00000514840 825 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AC112206.4-201ENST00000515142 405 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 RNU5F-2P-201ENST00000516066 82 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 RNU5F-4P-201ENST00000516581 114 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC0.03□□□□□ -2.4
COL7A1Q02388 AC107934.1-201ENST00000522215 217 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 SLC2A13P1-201ENST00000531560 322 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC0.03□□□□□ -2.4
COL7A1Q02388 AC093012.1-202ENST00000549403 582 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC0.03□□□□□ -2.4
COL7A1Q02388 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC0.03□□□□□ -2.4
COL7A1Q02388 MIR1273C-201ENST00000578669 77 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 MIR4742-201ENST00000581069 85 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 MIR4290-201ENST00000583807 95 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AC005261.5-201ENST00000596280 355 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AP001981.2-201ENST00000603241 418 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AP002906.1-201ENST00000603405 233 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AC107304.1-201ENST00000604229 296 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AL022154.1-201ENST00000604698 785 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC0.03□□□□□ -2.4
COL7A1Q02388 AL445264.1-201ENST00000621719 171 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 U6.99-201ENST00000637524 83 ntBASIC0.03□□□□□ -2.4
COL7A1Q02388 ANKRD36BP1-202ENST00000604892 1417 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 RNA5SP327-201ENST00000362494 101 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 RNU6-1167P-201ENST00000363227 94 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 RNU5A-8P-201ENST00000364102 114 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 RNA5SP259-201ENST00000365541 109 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 Y_RNA.423-201ENST00000384057 113 ntBASIC0.03□□□□□ -2.41
COL7A1Q02388 MIR660-201ENST00000385235 97 ntBASIC0.03□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms