Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC2.71□□□□□ -1.97
HOXA4Q00056 Z83843.1-201ENST00000604070 3685 ntBASIC2.71□□□□□ -1.98
HOXA4Q00056 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
HOXA4Q00056 RNU4-15P-201ENST00000362613 141 ntBASIC2.71□□□□□ -1.98
HOXA4Q00056 RNU6-799P-201ENST00000363567 107 ntBASIC2.71□□□□□ -1.98
HOXA4Q00056 SNORD27-201ENST00000363981 72 ntBASIC2.71□□□□□ -1.98
HOXA4Q00056 RNU6-280P-201ENST00000364145 104 ntBASIC2.71□□□□□ -1.98
HOXA4Q00056 Y_RNA.286-201ENST00000364813 102 ntBASIC2.71□□□□□ -1.98
HOXA4Q00056 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
HOXA4Q00056 Y_RNA.581-201ENST00000391017 97 ntBASIC2.71□□□□□ -1.98
HOXA4Q00056 AC009310.1-201ENST00000414414 451 ntBASIC2.71□□□□□ -1.98
HOXA4Q00056 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXA4Q00056 CST9LP2-201ENST00000437612 320 ntBASIC2.71□□□□□ -1.98
HOXA4Q00056 AC115115.1-201ENST00000449927 248 ntBASIC2.71□□□□□ -1.98
HOXA4Q00056 HSPE1P25-201ENST00000455484 251 ntBASIC2.71□□□□□ -1.98
HOXA4Q00056 RPL23AP62-201ENST00000463396 453 ntBASIC2.71□□□□□ -1.98
HOXA4Q00056 RNU1-143P-201ENST00000516296 146 ntBASIC2.71□□□□□ -1.98
HOXA4Q00056 AC074050.1-201ENST00000563247 211 ntBASIC2.71□□□□□ -1.98
HOXA4Q00056 MZT1P2-201ENST00000604387 248 ntBASIC2.71□□□□□ -1.98
HOXA4Q00056 AL034555.1-201ENST00000604816 211 ntBASIC2.71□□□□□ -1.98
HOXA4Q00056 U1.23-201ENST00000610293 146 ntBASIC2.71□□□□□ -1.98
HOXA4Q00056 RNU1-68P-201ENST00000615382 146 ntBASIC2.71□□□□□ -1.98
HOXA4Q00056 U1.39-201ENST00000621562 146 ntBASIC2.71□□□□□ -1.98
HOXA4Q00056 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
HOXA4Q00056 AL161912.2-201ENST00000565707 3007 ntBASIC2.71□□□□□ -1.98
HOXA4Q00056 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC2.7□□□□□ -1.98
HOXA4Q00056 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
HOXA4Q00056 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
HOXA4Q00056 MIR335-201ENST00000362173 94 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 RNA5SP374-201ENST00000362939 125 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 RNA5SP72-201ENST00000364442 117 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 RNU4-56P-201ENST00000364700 142 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 Y_RNA.416-201ENST00000384014 113 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 RNU6-20P-201ENST00000384106 107 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 Y_RNA.539-201ENST00000384635 107 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 MIR186-201ENST00000384988 86 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 RNU4-30P-201ENST00000410245 143 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXA4Q00056 AC112220.1-201ENST00000434628 355 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 HMGN2P20-201ENST00000437531 273 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 SUMO1P3-201ENST00000439961 304 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXA4Q00056 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC2.7□□□□□ -1.98
HOXA4Q00056 HMGN1P18-201ENST00000457642 277 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 snoU13.14-201ENST00000459372 104 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 snoU13.22-201ENST00000459428 104 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 AC103975.1-201ENST00000482506 483 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 RPL23AP70-201ENST00000483361 460 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 RPL36AP48-201ENST00000485521 314 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 PHBP14-201ENST00000512887 367 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 SNORA40.9-201ENST00000515895 93 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 SNORA31.6-201ENST00000516241 130 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 RRN3P3-201ENST00000549207 578 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 MIR5680-201ENST00000577577 84 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXA4Q00056 AC005520.5-201ENST00000613926 164 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 AC141273.2-201ENST00000618989 130 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 AL049781.1-201ENST00000623195 3585 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC2.7□□□□□ -1.98
HOXA4Q00056 MAPK10-322ENST00000641485 4530 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC2.7□□□□□ -1.98
HOXA4Q00056 BX322639.1-202ENST00000423987 2213 ntBASIC2.7□□□□□ -1.98
HOXA4Q00056 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC2.7□□□□□ -1.98
HOXA4Q00056 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
HOXA4Q00056 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.7□□□□□ -1.98
HOXA4Q00056 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
HOXA4Q00056 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC2.69□□□□□ -1.98
HOXA4Q00056 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.69□□□□□ -1.98
HOXA4Q00056 RNU1-75P-201ENST00000347264 129 ntBASIC2.69□□□□□ -1.98
HOXA4Q00056 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
HOXA4Q00056 SNORD81.1-201ENST00000363064 77 ntBASIC2.69□□□□□ -1.98
HOXA4Q00056 RNU6-338P-201ENST00000383888 105 ntBASIC2.69□□□□□ -1.98
HOXA4Q00056 Y_RNA.462-201ENST00000384268 102 ntBASIC2.69□□□□□ -1.98
HOXA4Q00056 MIR767-201ENST00000390228 109 ntBASIC2.69□□□□□ -1.98
HOXA4Q00056 AL603910.2-201ENST00000407268 136 ntBASIC2.69□□□□□ -1.98
HOXA4Q00056 Y_RNA.595-201ENST00000410403 105 ntBASIC2.69□□□□□ -1.98
HOXA4Q00056 Z98742.2-201ENST00000431564 187 ntBASIC2.69□□□□□ -1.98
HOXA4Q00056 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.69□□□□□ -1.98
HOXA4Q00056 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC2.69□□□□□ -1.98
HOXA4Q00056 RNU7-170P-201ENST00000459303 61 ntBASIC2.69□□□□□ -1.98
HOXA4Q00056 RN7SL601P-201ENST00000471221 293 ntBASIC2.69□□□□□ -1.98
HOXA4Q00056 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.69□□□□□ -1.98
HOXA4Q00056 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.69□□□□□ -1.98
HOXA4Q00056 UBL5P2-201ENST00000583788 219 ntBASIC2.69□□□□□ -1.98
HOXA4Q00056 PCGEM1.1-201ENST00000613431 131 ntBASIC2.69□□□□□ -1.98
HOXA4Q00056 uc_338.25-201ENST00000613756 156 ntBASIC2.69□□□□□ -1.98
HOXA4Q00056 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.69□□□□□ -1.98
HOXA4Q00056 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC2.69□□□□□ -1.98
HOXA4Q00056 AC017071.1-201ENST00000564407 2204 ntBASIC2.69□□□□□ -1.98
HOXA4Q00056 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
HOXA4Q00056 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.69□□□□□ -1.98
HOXA4Q00056 AL109809.4-201ENST00000603520 2185 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC2.68□□□□□ -1.98
HOXA4Q00056 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC2.68□□□□□ -1.98
HOXA4Q00056 MTND5P35-201ENST00000557537 1720 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
HOXA4Q00056 Y_RNA.20-201ENST00000362479 113 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 RNU1-105P-201ENST00000363470 161 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 Y_RNA.179-201ENST00000363844 90 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 Y_RNA.478-201ENST00000384358 107 ntBASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms