Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.28□□□□□ -2.05
HNF4AP41235 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.28□□□□□ -2.05
HNF4AP41235 MIR449A-201ENST00000362113 91 ntBASIC2.27□□□□□ -2.05
HNF4AP41235 Y_RNA.11-201ENST00000362375 109 ntBASIC2.27□□□□□ -2.05
HNF4AP41235 RNU5E-7P-201ENST00000365290 117 ntBASIC2.27□□□□□ -2.05
HNF4AP41235 Y_RNA.482-201ENST00000384377 111 ntBASIC2.27□□□□□ -2.05
HNF4AP41235 CBX3P9-201ENST00000402326 552 ntBASIC2.27□□□□□ -2.05
HNF4AP41235 U3.40-201ENST00000408706 208 ntBASIC2.27□□□□□ -2.05
HNF4AP41235 RNU6-325P-201ENST00000411132 105 ntBASIC2.27□□□□□ -2.05
HNF4AP41235 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.27□□□□□ -2.05
HNF4AP41235 AL137159.1-201ENST00000452808 512 ntBASIC2.27□□□□□ -2.05
HNF4AP41235 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC2.27□□□□□ -2.05
HNF4AP41235 MTCYBP40-201ENST00000509390 1135 ntBASIC2.27□□□□□ -2.05
HNF4AP41235 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.27□□□□□ -2.05
HNF4AP41235 RNU6-377P-201ENST00000515965 102 ntBASIC2.27□□□□□ -2.05
HNF4AP41235 RNU6-667P-201ENST00000517186 102 ntBASIC2.27□□□□□ -2.05
HNF4AP41235 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.27□□□□□ -2.05
HNF4AP41235 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.27□□□□□ -2.05
HNF4AP41235 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.27□□□□□ -2.05
HNF4AP41235 CTSLP2-204ENST00000629029 392 ntBASIC2.27□□□□□ -2.05
HNF4AP41235 AC008555.8-201ENST00000623602 2168 ntBASIC2.27□□□□□ -2.05
HNF4AP41235 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
HNF4AP41235 AC007336.1-201ENST00000576365 3828 ntBASIC2.27□□□□□ -2.05
HNF4AP41235 RNA5SP289-201ENST00000362332 137 ntBASIC2.26□□□□□ -2.05
HNF4AP41235 SNORD56.1-201ENST00000362913 68 ntBASIC2.26□□□□□ -2.05
HNF4AP41235 Y_RNA.259-201ENST00000364619 101 ntBASIC2.26□□□□□ -2.05
HNF4AP41235 U3.13-201ENST00000364804 214 ntBASIC2.26□□□□□ -2.05
HNF4AP41235 RNU6-336P-201ENST00000364891 107 ntBASIC2.26□□□□□ -2.05
HNF4AP41235 RNU6-601P-201ENST00000384540 107 ntBASIC2.26□□□□□ -2.05
HNF4AP41235 AF228730.4-201ENST00000421457 183 ntBASIC2.26□□□□□ -2.05
HNF4AP41235 USP9YP30-201ENST00000430729 455 ntBASIC2.26□□□□□ -2.05
HNF4AP41235 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC2.26□□□□□ -2.05
HNF4AP41235 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.26□□□□□ -2.05
HNF4AP41235 FTH1P25-201ENST00000447665 469 ntBASIC2.26□□□□□ -2.05
HNF4AP41235 RNA5SP233-201ENST00000459153 113 ntBASIC2.26□□□□□ -2.05
HNF4AP41235 RNU6-1037P-201ENST00000459571 107 ntBASIC2.26□□□□□ -2.05
HNF4AP41235 SNORD19B-201ENST00000459623 84 ntBASIC2.26□□□□□ -2.05
HNF4AP41235 AC116337.1-201ENST00000509680 687 ntBASIC2.26□□□□□ -2.05
HNF4AP41235 AC026782.1-201ENST00000512952 449 ntBASIC2.26□□□□□ -2.05
HNF4AP41235 RNU6-1213P-201ENST00000517075 94 ntBASIC2.26□□□□□ -2.05
HNF4AP41235 Y_RNA.718-201ENST00000517110 102 ntBASIC2.26□□□□□ -2.05
HNF4AP41235 AC109479.2-201ENST00000517842 174 ntBASIC2.26□□□□□ -2.05
HNF4AP41235 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.26□□□□□ -2.05
HNF4AP41235 RNU6ATAC35P-201ENST00000609276 444 ntBASIC2.26□□□□□ -2.05
HNF4AP41235 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.25□□□□□ -2.05
HNF4AP41235 RNU6-1059P-201ENST00000363752 98 ntBASIC2.25□□□□□ -2.05
HNF4AP41235 RNU6-1317P-201ENST00000364582 104 ntBASIC2.25□□□□□ -2.05
HNF4AP41235 Y_RNA.394-201ENST00000383942 103 ntBASIC2.25□□□□□ -2.05
HNF4AP41235 RNU6-1274P-201ENST00000384557 107 ntBASIC2.25□□□□□ -2.05
HNF4AP41235 MIR517A-201ENST00000385001 87 ntBASIC2.25□□□□□ -2.05
HNF4AP41235 MIR29B2-201ENST00000385055 81 ntBASIC2.25□□□□□ -2.05
HNF4AP41235 AL512604.1-201ENST00000404812 257 ntBASIC2.25□□□□□ -2.05
HNF4AP41235 RNU6-370P-201ENST00000411008 104 ntBASIC2.25□□□□□ -2.05
HNF4AP41235 MTND4P28-201ENST00000426217 387 ntBASIC2.25□□□□□ -2.05
HNF4AP41235 SNORA59A-201ENST00000459326 152 ntBASIC2.25□□□□□ -2.05
HNF4AP41235 RPL9P9-202ENST00000466501 579 ntBASIC2.25□□□□□ -2.05
HNF4AP41235 AK3P2-201ENST00000507976 429 ntBASIC2.25□□□□□ -2.05
HNF4AP41235 PTP4A1P4-201ENST00000512479 322 ntBASIC2.25□□□□□ -2.05
HNF4AP41235 Y_RNA.670-201ENST00000516255 105 ntBASIC2.25□□□□□ -2.05
HNF4AP41235 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.25□□□□□ -2.05
HNF4AP41235 CPDP1-201ENST00000579660 283 ntBASIC2.25□□□□□ -2.05
HNF4AP41235 MIR5007-201ENST00000583098 95 ntBASIC2.25□□□□□ -2.05
HNF4AP41235 AC009314.1-201ENST00000603871 304 ntBASIC2.25□□□□□ -2.05
HNF4AP41235 AC018462.2-201ENST00000605375 395 ntBASIC2.25□□□□□ -2.05
HNF4AP41235 AC019193.3-201ENST00000609144 554 ntBASIC2.25□□□□□ -2.05
HNF4AP41235 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.25□□□□□ -2.05
HNF4AP41235 AC084781.2-201ENST00000615568 161 ntBASIC2.25□□□□□ -2.05
HNF4AP41235 AL162373.1-201ENST00000620433 407 ntBASIC2.25□□□□□ -2.05
HNF4AP41235 AC098657.3-201ENST00000620434 263 ntBASIC2.25□□□□□ -2.05
HNF4AP41235 MTND4P23-201ENST00000447723 1363 ntBASIC2.24□□□□□ -2.05
HNF4AP41235 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.24□□□□□ -2.05
HNF4AP41235 RNU4-82P-201ENST00000362443 140 ntBASIC2.24□□□□□ -2.05
HNF4AP41235 Y_RNA.40-201ENST00000362645 93 ntBASIC2.24□□□□□ -2.05
HNF4AP41235 RNU6-1188P-201ENST00000363795 107 ntBASIC2.24□□□□□ -2.05
HNF4AP41235 Y_RNA.404-201ENST00000383978 102 ntBASIC2.24□□□□□ -2.05
HNF4AP41235 RNU6-1297P-201ENST00000384415 104 ntBASIC2.24□□□□□ -2.05
HNF4AP41235 MIR518A2-201ENST00000384966 87 ntBASIC2.24□□□□□ -2.05
HNF4AP41235 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.24□□□□□ -2.05
HNF4AP41235 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
HNF4AP41235 RPS29P13-201ENST00000402041 169 ntBASIC2.24□□□□□ -2.05
HNF4AP41235 RNU6-1050P-201ENST00000410388 107 ntBASIC2.24□□□□□ -2.05
HNF4AP41235 RNU2-32P-201ENST00000411193 191 ntBASIC2.24□□□□□ -2.05
HNF4AP41235 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.24□□□□□ -2.05
HNF4AP41235 RPS15AP28-201ENST00000435088 386 ntBASIC2.24□□□□□ -2.05
HNF4AP41235 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
HNF4AP41235 PCMTD1P1-201ENST00000455560 355 ntBASIC2.24□□□□□ -2.05
HNF4AP41235 SNORD5.1-201ENST00000458800 75 ntBASIC2.24□□□□□ -2.05
HNF4AP41235 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC2.24□□□□□ -2.05
HNF4AP41235 RNU6-1153P-201ENST00000516760 105 ntBASIC2.24□□□□□ -2.05
HNF4AP41235 RNU1-54P-201ENST00000517181 120 ntBASIC2.24□□□□□ -2.05
HNF4AP41235 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
HNF4AP41235 SNORD53-201ENST00000579969 78 ntBASIC2.24□□□□□ -2.05
HNF4AP41235 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.24□□□□□ -2.05
HNF4AP41235 AP000654.2-201ENST00000605633 586 ntBASIC2.24□□□□□ -2.05
HNF4AP41235 AC124303.1-201ENST00000605703 360 ntBASIC2.24□□□□□ -2.05
HNF4AP41235 AL133255.1-201ENST00000606374 441 ntBASIC2.24□□□□□ -2.05
HNF4AP41235 MIR3976-201ENST00000606807 139 ntBASIC2.24□□□□□ -2.05
HNF4AP41235 AL133215.3-201ENST00000609801 448 ntBASIC2.24□□□□□ -2.05
HNF4AP41235 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.24□□□□□ -2.05
HNF4AP41235 AC097372.5-201ENST00000623665 376 ntBASIC2.24□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 185.5 ms