Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.57□□□□□ -2.16
SHMT2P34897 AC006026.1-201ENST00000444025 1803 ntBASIC1.57□□□□□ -2.16
SHMT2P34897 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
SHMT2P34897 RNU1-17P-201ENST00000363022 152 ntBASIC1.57□□□□□ -2.16
SHMT2P34897 SNORA8-201ENST00000384574 139 ntBASIC1.57□□□□□ -2.16
SHMT2P34897 RN7SKP101-201ENST00000411376 320 ntBASIC1.57□□□□□ -2.16
SHMT2P34897 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC1.57□□□□□ -2.16
SHMT2P34897 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.57□□□□□ -2.16
SHMT2P34897 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.57□□□□□ -2.16
SHMT2P34897 AP005639.2-201ENST00000527592 928 ntBASIC1.57□□□□□ -2.16
SHMT2P34897 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
SHMT2P34897 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.57□□□□□ -2.16
SHMT2P34897 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.57□□□□□ -2.16
SHMT2P34897 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.57□□□□□ -2.16
SHMT2P34897 Z98751.3-201ENST00000604447 521 ntBASIC1.57□□□□□ -2.16
SHMT2P34897 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.57□□□□□ -2.16
SHMT2P34897 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.57□□□□□ -2.16
SHMT2P34897 AC124864.2-201ENST00000624736 186 ntBASIC1.57□□□□□ -2.16
SHMT2P34897 ZNF72P-201ENST00000425869 1908 ntBASIC1.57□□□□□ -2.16
SHMT2P34897 RNU4-66P-201ENST00000365199 138 ntBASIC1.56□□□□□ -2.16
SHMT2P34897 Y_RNA.504-201ENST00000384481 104 ntBASIC1.56□□□□□ -2.16
SHMT2P34897 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
SHMT2P34897 SNORA67.5-201ENST00000391036 107 ntBASIC1.56□□□□□ -2.16
SHMT2P34897 AL357139.1-201ENST00000407792 426 ntBASIC1.56□□□□□ -2.16
SHMT2P34897 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.56□□□□□ -2.16
SHMT2P34897 RNU6-1208P-201ENST00000459588 107 ntBASIC1.56□□□□□ -2.16
SHMT2P34897 AC132942.1-201ENST00000486753 483 ntBASIC1.56□□□□□ -2.16
SHMT2P34897 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.56□□□□□ -2.16
SHMT2P34897 Y_RNA.654-201ENST00000497848 106 ntBASIC1.56□□□□□ -2.16
SHMT2P34897 AP005660.1-201ENST00000522972 293 ntBASIC1.56□□□□□ -2.16
SHMT2P34897 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.56□□□□□ -2.16
SHMT2P34897 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.56□□□□□ -2.16
SHMT2P34897 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.56□□□□□ -2.16
SHMT2P34897 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.56□□□□□ -2.16
SHMT2P34897 MIR5692C1-201ENST00000585309 91 ntBASIC1.56□□□□□ -2.16
SHMT2P34897 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.56□□□□□ -2.16
SHMT2P34897 AC092807.2-201ENST00000609367 243 ntBASIC1.56□□□□□ -2.16
SHMT2P34897 AC064836.2-201ENST00000609491 462 ntBASIC1.56□□□□□ -2.16
SHMT2P34897 AL773524.1-201ENST00000614065 229 ntBASIC1.56□□□□□ -2.16
SHMT2P34897 AC048344.4-201ENST00000619744 527 ntBASIC1.56□□□□□ -2.16
SHMT2P34897 AC073534.2-201ENST00000620377 381 ntBASIC1.56□□□□□ -2.16
SHMT2P34897 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
SHMT2P34897 RNU6-1085P-201ENST00000363576 107 ntBASIC1.55□□□□□ -2.16
SHMT2P34897 RNU4-56P-201ENST00000364700 142 ntBASIC1.55□□□□□ -2.16
SHMT2P34897 RNU4-42P-201ENST00000364738 142 ntBASIC1.55□□□□□ -2.16
SHMT2P34897 Y_RNA.332-201ENST00000365271 113 ntBASIC1.55□□□□□ -2.16
SHMT2P34897 Y_RNA.481-201ENST00000384373 102 ntBASIC1.55□□□□□ -2.16
SHMT2P34897 RNU6-780P-201ENST00000391030 104 ntBASIC1.55□□□□□ -2.16
SHMT2P34897 RNU11-3P-201ENST00000391111 133 ntBASIC1.55□□□□□ -2.16
SHMT2P34897 AC244636.1-201ENST00000421152 228 ntBASIC1.55□□□□□ -2.16
SHMT2P34897 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.55□□□□□ -2.16
SHMT2P34897 RPS29P27-201ENST00000463711 170 ntBASIC1.55□□□□□ -2.16
SHMT2P34897 SRRM1P2-201ENST00000464531 1192 ntBASIC1.55□□□□□ -2.16
SHMT2P34897 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC1.55□□□□□ -2.16
SHMT2P34897 AC008628.2-201ENST00000502605 298 ntBASIC1.55□□□□□ -2.16
SHMT2P34897 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.55□□□□□ -2.16
SHMT2P34897 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.55□□□□□ -2.16
SHMT2P34897 SNORA19.2-201ENST00000516013 114 ntBASIC1.55□□□□□ -2.16
SHMT2P34897 Y_RNA.693-201ENST00000516641 110 ntBASIC1.55□□□□□ -2.16
SHMT2P34897 RNA5SP490-201ENST00000517141 136 ntBASIC1.55□□□□□ -2.16
SHMT2P34897 AC025423.5-201ENST00000550230 219 ntBASIC1.55□□□□□ -2.16
SHMT2P34897 AC021231.3-201ENST00000558497 370 ntBASIC1.55□□□□□ -2.16
SHMT2P34897 MIR3923-201ENST00000579521 83 ntBASIC1.55□□□□□ -2.16
SHMT2P34897 BX248123.2-201ENST00000606318 124 ntBASIC1.55□□□□□ -2.16
SHMT2P34897 AL121757.2-201ENST00000611223 313 ntBASIC1.55□□□□□ -2.16
SHMT2P34897 PCGEM1.1-201ENST00000613431 131 ntBASIC1.55□□□□□ -2.16
SHMT2P34897 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.55□□□□□ -2.16
SHMT2P34897 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
SHMT2P34897 RNU6-522P-201ENST00000364497 107 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 RNU6-26P-201ENST00000383985 107 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 Y_RNA.559-201ENST00000384686 107 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 RNA5SP501-201ENST00000410990 112 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
SHMT2P34897 TIMM9P3-201ENST00000428659 274 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 HMGN2P18-201ENST00000450680 270 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 MTND3P16-201ENST00000452205 344 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 AC007547.1-201ENST00000462177 490 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 AC107401.1-201ENST00000503426 685 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 AC019235.1-201ENST00000503847 207 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 AC093534.1-201ENST00000504977 132 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 AC091885.1-201ENST00000506658 268 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 ATP5EP1-201ENST00000510257 156 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 RNU6-612P-201ENST00000516909 102 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 AC087854.1-201ENST00000519706 414 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 RNU6-323P-201ENST00000521915 107 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 AC104576.1-201ENST00000524225 88 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 AC024909.2-201ENST00000553035 286 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 CYP4A27P-201ENST00000567218 190 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 AC022254.1-201ENST00000567857 235 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 SNORD53B-201ENST00000577887 78 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 MIR3169-201ENST00000578032 83 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 MIR4769-201ENST00000584126 77 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 AL357078.3-201ENST00000607528 618 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 AL590240.4-201ENST00000616908 390 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
SHMT2P34897 MTND5P10-201ENST00000603719 1809 ntBASIC1.54□□□□□ -2.16
SHMT2P34897 RNA5SP99-201ENST00000364020 114 ntBASIC1.53□□□□□ -2.16
SHMT2P34897 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
SHMT2P34897 RNU6-378P-201ENST00000384324 107 ntBASIC1.53□□□□□ -2.16
SHMT2P34897 RNU6-160P-201ENST00000384591 107 ntBASIC1.53□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms