Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 RPL23AP95-201ENST00000426806 265 ntBASIC2.8□□□□□ -1.96
CIITAP33076 AL591043.1-201ENST00000432461 424 ntBASIC2.8□□□□□ -1.96
CIITAP33076 RPL23AP50-201ENST00000434149 455 ntBASIC2.8□□□□□ -1.96
CIITAP33076 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.8□□□□□ -1.96
CIITAP33076 AC006026.2-201ENST00000457376 180 ntBASIC2.8□□□□□ -1.96
CIITAP33076 AC114801.2-201ENST00000503825 781 ntBASIC2.8□□□□□ -1.96
CIITAP33076 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.8□□□□□ -1.96
CIITAP33076 AC105758.1-201ENST00000506038 399 ntBASIC2.8□□□□□ -1.96
CIITAP33076 RNU6-327P-201ENST00000516270 127 ntBASIC2.8□□□□□ -1.96
CIITAP33076 RPPH1-2P-201ENST00000516688 293 ntBASIC2.8□□□□□ -1.96
CIITAP33076 AC010186.2-204ENST00000537668 439 ntBASIC2.8□□□□□ -1.96
CIITAP33076 AC060766.3-201ENST00000591442 263 ntBASIC2.8□□□□□ -1.96
CIITAP33076 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.8□□□□□ -1.96
CIITAP33076 AL355802.3-201ENST00000607571 545 ntBASIC2.8□□□□□ -1.96
CIITAP33076 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC2.8□□□□□ -1.96
CIITAP33076 SNORA43.4-201ENST00000629559 138 ntBASIC2.8□□□□□ -1.96
CIITAP33076 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
CIITAP33076 Z82195.2-201ENST00000612348 18351 ntBASIC2.79□□□□□ -1.96
CIITAP33076 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
CIITAP33076 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.79□□□□□ -1.96
CIITAP33076 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
CIITAP33076 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
CIITAP33076 Y_RNA.645-201ENST00000391229 102 ntBASIC2.79□□□□□ -1.96
CIITAP33076 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.79□□□□□ -1.96
CIITAP33076 AC113618.1-201ENST00000416747 285 ntBASIC2.79□□□□□ -1.96
CIITAP33076 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.79□□□□□ -1.96
CIITAP33076 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.79□□□□□ -1.96
CIITAP33076 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.79□□□□□ -1.96
CIITAP33076 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.79□□□□□ -1.96
CIITAP33076 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.79□□□□□ -1.96
CIITAP33076 Y_RNA.661-201ENST00000516003 99 ntBASIC2.79□□□□□ -1.96
CIITAP33076 SCARNA17.1-201ENST00000516211 143 ntBASIC2.79□□□□□ -1.96
CIITAP33076 SCARNA17.2-201ENST00000516334 143 ntBASIC2.79□□□□□ -1.96
CIITAP33076 RNU4-77P-201ENST00000516692 156 ntBASIC2.79□□□□□ -1.96
CIITAP33076 RNU6-826P-201ENST00000516827 104 ntBASIC2.79□□□□□ -1.96
CIITAP33076 RNU6-988P-201ENST00000519081 107 ntBASIC2.79□□□□□ -1.96
CIITAP33076 MRPS36P4-201ENST00000534436 298 ntBASIC2.79□□□□□ -1.96
CIITAP33076 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.79□□□□□ -1.96
CIITAP33076 AC006504.6-201ENST00000590142 199 ntBASIC2.79□□□□□ -1.96
CIITAP33076 SNORD58B-201ENST00000607313 66 ntBASIC2.79□□□□□ -1.96
CIITAP33076 AC006157.1-201ENST00000611750 366 ntBASIC2.79□□□□□ -1.96
CIITAP33076 AC083806.3-201ENST00000614016 455 ntBASIC2.79□□□□□ -1.96
CIITAP33076 SCARNA17.4-201ENST00000614296 143 ntBASIC2.79□□□□□ -1.96
CIITAP33076 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.79□□□□□ -1.96
CIITAP33076 AC138305.3-201ENST00000624988 240 ntBASIC2.79□□□□□ -1.96
CIITAP33076 RBBP8P1-201ENST00000449447 1844 ntBASIC2.79□□□□□ -1.96
CIITAP33076 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.78□□□□□ -1.96
CIITAP33076 RNU6-874P-201ENST00000362390 105 ntBASIC2.78□□□□□ -1.96
CIITAP33076 RNU4-82P-201ENST00000362443 140 ntBASIC2.78□□□□□ -1.96
CIITAP33076 Y_RNA.80-201ENST00000362996 102 ntBASIC2.78□□□□□ -1.96
CIITAP33076 RNU1-115P-201ENST00000365329 160 ntBASIC2.78□□□□□ -1.96
CIITAP33076 RNU6-487P-201ENST00000365430 104 ntBASIC2.78□□□□□ -1.96
CIITAP33076 Y_RNA.422-201ENST00000384054 114 ntBASIC2.78□□□□□ -1.96
CIITAP33076 Y_RNA.485-201ENST00000384395 102 ntBASIC2.78□□□□□ -1.96
CIITAP33076 Y_RNA.577-201ENST00000384794 101 ntBASIC2.78□□□□□ -1.96
CIITAP33076 MRPL42P3-201ENST00000401492 326 ntBASIC2.78□□□□□ -1.96
CIITAP33076 RNU6-1156P-201ENST00000410365 100 ntBASIC2.78□□□□□ -1.96
CIITAP33076 RNU6-1140P-201ENST00000410517 106 ntBASIC2.78□□□□□ -1.96
CIITAP33076 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.78□□□□□ -1.96
CIITAP33076 AL445687.1-201ENST00000439946 251 ntBASIC2.78□□□□□ -1.96
CIITAP33076 RPL30P1-201ENST00000488676 339 ntBASIC2.78□□□□□ -1.96
CIITAP33076 RPL22P13-201ENST00000493291 347 ntBASIC2.78□□□□□ -1.96
CIITAP33076 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.78□□□□□ -1.96
CIITAP33076 RNU6-264P-201ENST00000517134 104 ntBASIC2.78□□□□□ -1.96
CIITAP33076 SNORD116.3-201ENST00000517176 78 ntBASIC2.78□□□□□ -1.96
CIITAP33076 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
CIITAP33076 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.78□□□□□ -1.96
CIITAP33076 MIR4680-201ENST00000580906 66 ntBASIC2.78□□□□□ -1.96
CIITAP33076 AC090897.2-201ENST00000581715 130 ntBASIC2.78□□□□□ -1.96
CIITAP33076 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.78□□□□□ -1.96
CIITAP33076 AC092447.9-201ENST00000603395 144 ntBASIC2.78□□□□□ -1.96
CIITAP33076 AL356280.1-201ENST00000603614 379 ntBASIC2.78□□□□□ -1.96
CIITAP33076 AL450472.1-202ENST00000637286 180 ntBASIC2.78□□□□□ -1.96
CIITAP33076 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
CIITAP33076 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
CIITAP33076 AC135776.4-201ENST00000624300 1904 ntBASIC2.78□□□□□ -1.97
CIITAP33076 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.77□□□□□ -1.97
CIITAP33076 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.77□□□□□ -1.97
CIITAP33076 Y_RNA.428-201ENST00000384078 102 ntBASIC2.77□□□□□ -1.97
CIITAP33076 RNA5SP494-201ENST00000410653 129 ntBASIC2.77□□□□□ -1.97
CIITAP33076 HMGN2P35-201ENST00000412164 270 ntBASIC2.77□□□□□ -1.97
CIITAP33076 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.77□□□□□ -1.97
CIITAP33076 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.77□□□□□ -1.97
CIITAP33076 RNA5SP112-201ENST00000515937 99 ntBASIC2.77□□□□□ -1.97
CIITAP33076 RNU6-1045P-201ENST00000516321 107 ntBASIC2.77□□□□□ -1.97
CIITAP33076 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
CIITAP33076 MIR3117-201ENST00000584034 78 ntBASIC2.77□□□□□ -1.97
CIITAP33076 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
CIITAP33076 AC087588.2-201ENST00000617667 426 ntBASIC2.77□□□□□ -1.97
CIITAP33076 AC024581.2-201ENST00000619986 252 ntBASIC2.77□□□□□ -1.97
CIITAP33076 MPP6-209ENST00000625307 126 ntTSL 5 BASIC2.77□□□□□ -1.97
CIITAP33076 MIR3529-201ENST00000637713 78 ntBASIC2.77□□□□□ -1.97
CIITAP33076 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.77□□□□□ -1.97
CIITAP33076 AC009541.1-201ENST00000438279 2662 ntBASIC2.76□□□□□ -1.97
CIITAP33076 AC080100.1-201ENST00000624239 5356 ntBASIC2.76□□□□□ -1.97
CIITAP33076 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
CIITAP33076 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.76□□□□□ -1.97
CIITAP33076 AL359854.1-201ENST00000614203 1594 ntBASIC2.76□□□□□ -1.97
CIITAP33076 HAUS6P2-201ENST00000433254 2404 ntBASIC2.76□□□□□ -1.97
CIITAP33076 Y_RNA.158-201ENST00000363651 101 ntBASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 128 ms